eda78578a5c610db7acf00034b8823d6e9b96383 hiram Tue Feb 19 14:39:21 2019 -0800 returning any and all data from bigBed track refs #18869 diff --git src/hg/hubApi/hubApi.c src/hg/hubApi/hubApi.c index 112b26e..718a9e6 100644 --- src/hg/hubApi/hubApi.c +++ src/hg/hubApi/hubApi.c @@ -519,33 +519,39 @@ hPrintf("

Example URLs to return json data structures:

\n"); hPrintf("
    \n"); hPrintf("
  1. list public hubs /cgi-bin/hubApi/list/publicHubs
    2. \n"); hPrintf("
  2. list database genomes /cgi-bin/hubApi/list/ucscGenomes
    3. \n"); hPrintf("
  3. list genomes from specified hub /cgi-bin/hubApi/list/hubGenomes?hubUrl=%s
    4. \n", url, url); hPrintf("
  4. list tracks from specified hub and genome /cgi-bin/hubApi/list/tracks?hubUrl=%s&genome=%s
    5. \n", url, hubGenome->name, url, hubGenome->name); hPrintf("
  5. list tracks from specified UCSC database /cgi-bin/hubApi/list/tracks?db=%s
    6. \n", ucscDb, ucscDb); hPrintf("
  6. list chromosomes from specified UCSC database /cgi-bin/hubApi/list/chromosomes?db=%s
    7. \n", ucscDb, ucscDb); hPrintf("
  7. list chromosomes from specified track from UCSC databaset /cgi-bin/hubApi/list/chromosomes?db=%s&track=gap
    8. \n", ucscDb, ucscDb); hPrintf("
  8. get sequence from specified database and chromosome /cgi-bin/hubApi/getData/sequence?db=%s&chrom=chrM
    9. \n", ucscDb, ucscDb); hPrintf("
  9. get sequence from specified database, chromosome with start,end coordinates /cgi-bin/hubApi/getData/sequence?db=%s&chrom=chrM&start=0&end=128
    10. \n", ucscDb, ucscDb); hPrintf("
  10. get entire track data from specified database and track name (gold == Assembly) /cgi-bin/hubApi/getData/track?db=%s&track=gold
    11. \n", ucscDb, ucscDb); hPrintf("
  11. get track data from specified database, chromosome and track name (gold == Assembly) /cgi-bin/hubApi/getData/track?db=%s&chrom=chrM&track=gold
    12. \n", ucscDb, ucscDb); hPrintf("
  12. get track data from specified database, chromosome, track name, start and end coordinates /cgi-bin/hubApi/getData/track?db=%s&chrom=chr1&track=gold&start=107680&end=186148
    13. \n", ucscDb, ucscDb); +hPrintf("
  13. get entire track data from specified hub and track name /cgi-bin/hubApi/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt&genome=hg19&track=ultraConserved
    14. \n"); +hPrintf("
  14. get track data from specified hub, chromosome and track name (full chromosome) /cgi-bin/hubApi/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt&genome=_araTha1&chrom=chrCp&track=assembly_
    15. \n"); hPrintf("
  15. get track data from specified hub, chromosome, track name, start and end coordinates /cgi-bin/hubApi/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt&genome=_araTha1&chrom=chr1&track=assembly_&start=0&end=14309681
    16. \n"); hPrintf("
\n"); +hPrintf("

Example URLs to generate errors:

\n"); +hPrintf("
  • get track data from specified hub, chromosome, track name, start and end coordinates /cgi-bin/hubApi/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt&genome=_araTha1&chrom=chrI&track=assembly_&start=0&end=14309681
    • \n"); +hPrintf("
      \n"); +hPrintf("
    \n"); } /* static void showExamples() */ #ifdef NOT static void showCartDump() /* for information purposes only during development, will become obsolete */ { hPrintf("

    cart dump

    "); hPrintf("
    \n");
 cartDump(cart);
 hPrintf("
    \n"); } #endif static void doMiddle(struct cart *theCart) /* Set up globals and make web page */