Commits for jnavarr5

v378_preview to v378_preview2 (2019-02-11 to 2019-02-18) v378

79944079c8c70bb1bf129a2068336580287523b4 Mon Feb 11 10:55:44 2019 -0800

• Updating redirected links for hg16 found by the uiLinks cronjob, no Redmine.
  • src/hg/makeDb/trackDb/human/encodeEgaspFull.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/chainSelf.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeGencodeGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeGencodeIntron.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeSangerChipH3H4.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeUcsdNgGif.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeYaleAffyRNATars.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encodeYaleAffyRNATransMap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/encode_tba23EvoFold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/hg17Kg.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/mzPt1Mm3Rn3Gg2_pHMM.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/rBestChainPanTro1.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/rBestNetPanTro1.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/knownGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/snp.html - lines changed 1, context: html, text, full: html, text

e415908171485847b1089ce4e71e74b5bc746727 Mon Feb 11 12:40:11 2019 -0800

• Updating shortLabels to be a little more unique, refs #21811
  • src/hg/makeDb/trackDb/mouse/mm10/tabulamuris.ra - lines changed 4, context: html, text, full: html, text

93713cf0b9c19876ee14e41ef2559865b7eaa8ef Mon Feb 11 15:55:21 2019 -0800

• Adding extra spaces to match the stanza indentation, refs #21811
  • src/hg/makeDb/trackDb/mouse/mm10/tabulamuris.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

c939870f6812ab1eed40f2a0631004e0de8d8cc0 Mon Feb 11 16:16:13 2019 -0800

• Turning off auto-scaling for the Coverage tracks by default, refs #21811
  • src/hg/makeDb/trackDb/mouse/mm10/tabulamuris.ra - lines changed 82, context: html, text, full: html, text

579389443d168282e02d17ea47c058556ab91509 Mon Feb 11 17:04:40 2019 -0800

• Adding information to the history.html page from the Google Doc. No edits to the text other than changing 'UCSC Genome Bioinformatics Group' and 'UC Santa Cruz Group' to UCSC Genome Browser Group, refs #20314
  • src/hg/htdocs/history.html - lines changed 442, context: html, text, full: html, text

e5158648933d043b08778efb6b1fcf41c2fd7fce Tue Feb 12 09:24:45 2019 -0800

• Updating http to https for rheMac2, uiLinks cronjob
  • src/hg/makeDb/trackDb/rhesus/rheMac2/polyASeqSites.html - lines changed 1, context: html, text, full: html, text

6bf7c9c88c87ba1df563e87f3df35ce568685610 Tue Feb 12 10:05:31 2019 -0800

• Changing 'UCSC Genome Browser Group' back to 'UC Santa Cruz group' after Ann's input, refs #20314
  • src/hg/htdocs/history.html - lines changed 2, context: html, text, full: html, text

cb04f6deaf80f5bc4dc3e37dd48f959aa0a6d410 Wed Feb 13 11:39:09 2019 -0800

• Updating redirected links for mm10, uiLinks cronjob.
  • src/hg/makeDb/trackDb/mouse/mm10/chainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/genomicSuperDups.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/knownGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/mm10Strains1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/strainSNPs.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/ucscRetroAli6.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/vertebrateChainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM16.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM18.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM9.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patSeq.html - lines changed 1, context: html, text, full: html, text

673a4f904bb90b65b60d800c54d1e739ffc61f14 Fri Feb 15 08:57:14 2019 -0800

• Updating redirected links for tarSyr2, uiLinks cronjob
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html - lines changed 1, context: html, text, full: html, text