a9bfddd1f195f8ca2c2cccad324c07a602804270 braney Wed Mar 13 15:31:37 2019 -0700 add MANE track diff --git src/hg/lib/mane.as src/hg/lib/mane.as new file mode 100644 index 0000000..eda1c98 --- /dev/null +++ src/hg/lib/mane.as @@ -0,0 +1,28 @@ +table manePred +"MANE bigGenePred" + ( + string chrom; "Reference sequence chromosome or scaffold" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Ensembl id" + uint score; "Score (0-1000)" + char[1] strand; "+ or - for strand" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "RGB value (use R,G,B string in input file)" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + string name2; "Alternative/human readable name" + string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" + string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" + int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" + string type; "Transcript type" + string geneName; "Ensembl Gene identifier" + string geneName2; "Gene symbol" + string geneType; "Gene type" + string ensemblProtAcc; "Ensembl protein identifier, none for noncoding" + string ncbiId; "NCBI id" + string ncbiGene; "NCBI gene" + string ncbiProtAcc; "NCBI protein identifier, none for noncoding" + )