Commits for max

v378_base to v379_preview (2019-02-25 to 2019-03-04) v379

34b790e2381539fa6830bd2129c5089f44be4595 Tue Feb 26 02:14:18 2019 -0800

• making hgGeneGraph bottleneck penalty stricter, refs #22999
  • src/hg/pyLib/hgLib.py - lines changed 9, context: html, text, full: html, text

e13edc60a0c6486b8b4ad715e12683b28f6eb166 Tue Feb 26 02:59:37 2019 -0800

• fix debug messages and bot delay system in hgGeneGraph, refs #22999
  • src/hg/pyLib/hgLib.py - lines changed 1, context: html, text, full: html, text

ab24e76f229a7159903ed55f6374127f29ffe446 Tue Feb 26 03:11:16 2019 -0800

• adding constants and one more fix to botdelay system in gene graph, refs #22999
  • src/hg/pyLib/hgLib.py - lines changed 17, context: html, text, full: html, text

80a5b5305484b869968b21f6344c2fb2c3034af3 Tue Feb 26 05:34:56 2019 -0800

• adding note about scoring change to crispr 10k track, no redmine, email from Tanya Granchrova at Allan Brain Atlas
  • src/hg/makeDb/trackDb/crispr10K.html - lines changed 10, context: html, text, full: html, text

02cfe5b9327285bfb94e01f14d470a7ac949e8c0 Tue Feb 26 08:13:27 2019 -0800

• adding Hiram to crispr tracks page, no redmine
  • src/hg/makeDb/trackDb/crispr.html - lines changed 1, context: html, text, full: html, text

e9be36c735264edba20ec1a96bd4eea07ca0c00c Tue Feb 26 08:18:15 2019 -0800

• adding mastermind make docs and scripts, refs #21895
  • src/hg/makeDb/doc/hg19.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/mastermind/mastermind.as - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/mastermind/mastermindToBed.py - lines changed 61, context: html, text, full: html, text

b971b945ce1f2015276965ed8b124634cee7bfa6 Wed Feb 27 06:04:03 2019 -0800

• fixing left margin problem for barchart plot, refs #21811
  • src/hg/hgc/hgcData/barChartBoxplot.R - lines changed 8, context: html, text, full: html, text

98d723e403eff543a9075b4982272907c5c58120 Wed Feb 27 06:14:23 2019 -0800

• adding trackDbRename tool, created to rename tabula muris tracks
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/trackDbRename - lines changed 92, context: html, text, full: html, text

ee77efd370267585db4d4b719e87ff331efabc76 Wed Feb 27 06:33:49 2019 -0800

• rearranging tabula muris tracks as per Jim, refs #21811
  • src/hg/makeDb/trackDb/mouse/mm10/tabulamuris.ra - lines changed 351, context: html, text, full: html, text

5115346eab4f7f9c6727c899266d92b69f89f379 Wed Feb 27 06:41:45 2019 -0800

• more tweaks to tabula muris, refs #21811
  • src/hg/makeDb/trackDb/mouse/mm10/tabulamuris.ra - lines changed 4, context: html, text, full: html, text

9e42bf8546abb0abc46036b726c8a25515db80a0 Thu Feb 28 05:08:28 2019 -0800

• adding tool for sorting of a trackDb (e.g. trackHub) file. no redmine
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/tdbRename - lines changed 92, context: html, text, full: html, text
  • src/utils/tdbSort - lines changed 128, context: html, text, full: html, text
  • src/utils/trackDbRename - lines changed 92, context: html, text, full: html, text