746ef72bc9c7927689c5a84c2c96834240b2e99d ccpowell Mon Apr 8 08:53:16 2019 -0700 editing news arch for Gencode VM20, refs #22997 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 7147388..d8c4f3c 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -42,48 +42,49 @@ <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> <a name="041019"></a> <h2>Apr. 10, 2019 GENCODE Genes VM20 track released for mouse (GRCm38/mm10)</h2> <p> -We are pleased to announce the release of the GENCODE Genes VM20 track for the Mouse -(<a href="../cgi-bin/hgTracks?db=mm10&position=chr12%3A56694976-56714605&hideTracks=1&knownGene=full&ignoreCookie=1" target="_blank">GRCm38/mm10</a>) -assembly. In this GENCODE Genes update, we have made the ENSMUST* IDs the default IDs and have added +We are pleased to announce the release of the GENCODE Genes VM20 track for the Mouse assembly +(<a href="../cgi-bin/hgTracks?db=mm10&position=chr12%3A56694976-56714605&hideTracks=1&knownGene=full&ignoreCookie=1" +target="_blank">GRCm38/mm10</a>). +In this GENCODE Genes update, we have made the ENSMUST* IDs the default IDs and have added the GENCODE pseudogenes to the knownGene tables. </p> <p> More details about the GENCODE Genes VM20 track can be found on the <a href="../cgi-bin/hgTrackUi?db=mm10&g=knownGene" target="_blank">GENCODE Genes track description page</a>.</p> <p> We would like to thank the <a href="https://www.gencodegenes.org/" target="_blank">GENCODE Project</a> for providing the data. The creation of this track was made possible thanks to Brian Raney, Mark Diekhans, and Conner Powell.</p> <a name="032619"></a> <h2> -Mar, 26 2019 New Genomenon Mastermind Variants track for Human (hg19) +Mar. 26, 2019 New Genomenon Mastermind Variants track for Human (hg19) </h2> <p> We are pleased to announce the release of the Genomenon Mastermind Variants track for the <a href="../cgi-bin/hgTracks?db=hg19&position=chr21:33032078-33032099&hideTracks=1&varsInPubs=show&mastermind=pack&knownGene=pack&ignoreCookie=1" target="_blank">hg19/GRCh37 assembly</a>. This track is composed of variants found in full-text scientific publications collected by <a href="https://www.genomenon.com/mastermind" target="_blank">Genomenon Mastermind</a>. Mastermind uses software that searches for disease-gene-variant associations in the scientific literature to generate a commercial database. </p> <p> Genomic locations of variants are labeled with the nucleotide change (C>A) where one can hover over the features to see the gene impacted, the specific amino acid change, and the related support scores (SOD1:A2E - 3/3/3). By clicking an item a link titled "Protein change and link to details" provides access to the respective Mastermind variant database page for further