fff086f0ce7a549b800ec5ce3409a48287bd6732
dschmelt
  Wed Apr 3 12:14:13 2019 -0700
Updating the MANE track html description #23113

diff --git src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
index cb4c830..1c9884b 100755
--- src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
+++ src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
@@ -35,31 +35,31 @@
 <strong>Enable Haplotype sorting display:</strong> When this option is checked, each sample's phased
 and/or homozygous genotypes are split into haplotypes, clustered by similarity around a central 
 variant, and sorted for display by their position in the clustering tree. The tree (as 
 space allows) is drawn in the label area next to the track image. Leaf clusters, in 
 which all haplotypes are identical (at least for the variants used in clustering), are 
 colored purple. 
 </p>
 <p class='text-center'>
   <img src="../../images/vcfTree.png" alt="VCF tree diagram" width=600px>
   <p class='gbsCaption text-center'>The haplotype tree can be seen to the left of the track.</p>
 </p>
 <p>
 Each variant is drawn as a vertical column, using color to distinguish between 
 reference alleles and alternate alleles of the horizontally running haplotypes. If unchecked, then 
 the display is the same as for VCF without genotypes: a stacked bar graph of the top two alleles, 
-showing the proportion of alleles if allele counts are available. This is check enabled by 
+showing the proportion of alleles if allele counts are available. This is setting is enabled by 
 default.</p>
 
 <p>
 The following options are applicable only when the haplotype sorting display is enabled:</p>
 <p> 
 <strong>Haplotype sorting order:</strong> Haplotypes are sorted using a distance function that 
 uses a central variant. Differences between haplotypes are penalized with weights that decrease 
 for each successive variant away from the central variant.  By default, the median variant in 
 the window is used. By clicking on a variant in the display, you will get the option to always 
 use that variant when it is in the current view.</p>
 <p>
 <strong>Haplotype coloring scheme:</strong> There are three ways that reference and alternate 
 alleles can be colored:</p>
 <ul>
   <li>