2da177033ff3eb8e5c359fc3254c3be92d447c59
mspeir
  Tue Apr 2 11:18:49 2019 -0700
Adding paper and database links for two kriegstein datasets. refs #23155

diff --git src/hg/cirm/gateway/htdocs/projects.html src/hg/cirm/gateway/htdocs/projects.html
index b14a964..0b453d9 100755
--- src/hg/cirm/gateway/htdocs/projects.html
+++ src/hg/cirm/gateway/htdocs/projects.html
@@ -267,31 +267,43 @@
                 <td class="text-orange text-center"></td>
                 <td class="text-dark-blue text-center"></td>
             </tr>
             <tr>
                 <td></td>
                 <td class="lab text-nowrap"><a href="https://kriegsteinlab.ucsf.edu/"
                  target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top"
                  data-container="body" data-html="true" title="Arnold Kriegstein, UCSF"
                  data-content="The Kriegstein lab is using single-cell RNA profiling to learn
                  about the diverse population of cortical neurons.">Kriegstein</a>
                  <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i></td>
                 <td class="datasetid"><a href="/d/kriegsteinBrainOrganoids1">kriegsteinBrainOrganoids1</a> <i class="fas fa-info-circle"
                  data-toggle="popover" data-trigger="hover" class="popoveradjust"
                  data-placement="top"  data-container="body" data-html="true" title="Single-cell
                  Brain Organoids" data-content="874 iPSC-derived brain organoid samples processed
-                 via single-cell RNA-seq." aria-hidden="true"></i></td>
+                 via single-cell RNA-seq." aria-hidden="true"></i><br>&nbsp;&nbsp;
+                 <a href="https://www.ncbi.nlm.nih.gov/pubmed/26406371" target="_blank"
+                 data-toggle="popover" data-trigger="hover" data-placement="top"
+                 data-container="body" data-html="true" title="Pollen AA et al. 2019.
+                 Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell."
+                 data-content="View publication from this dataset"><i class="fas fa-file-alt"
+                 aria-hidden="true"></i></a>&nbsp;
+                <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124299"
+                target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top"
+                data-container="body" data-html="true" title="<img
+                src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height:
+                2em;'>View GSE124299" data-content="Click database icon to view on GEO."><i
+                class="fas fa-database" aria-hidden="true"></i></a></td>
                 <td class="text-dark-blue text-center"><i class="fas fa-braille fa-lg" aria-hidden="true"></i></td>
                 <td class="text-dark-pink text-center"></td>
                 <td class="text-dark-pink text-center"></td>
                 <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td>
                 <td class="text-light-blue text-center"></td>
                 <td class="text-light-blue text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-orange text-center"></td>
                 <td class="text-dark-blue text-center"></td>
@@ -332,31 +344,43 @@
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-orange text-center"></td>
                 <td class="text-dark-blue text-center"></td>
             </tr>
             <tr>
                 <td></td>
                 <td class="lab text-nowrap"><a href="" target="_blank" data-toggle="popover"
                  data-trigger="hover" data-placement="top"  data-container="body"
                  data-html="true" title="" data-content=""></a></td>
                 <td class="datasetid"><a href="/d/kriegstein6k">kriegstein6k</a> <i class="fas fa-info-circle" aria-hidden="true"
                  data-toggle="popover" data-trigger="hover" class="popoveradjust"
                  data-placement="top"  data-container="body" data-html="true" title=""
-                 data-content="RNA-seq from 6,000 primary cells at UCSF."></i></td>
+                 data-content="RNA-seq from 6,000 primary cells at UCSF."></i><br>&nbsp;&nbsp;
+                 <a href="https://www.ncbi.nlm.nih.gov/pubmed/29217575" target="_blank"
+                 data-toggle="popover" data-trigger="hover" data-placement="top"
+                 data-container="body" data-html="true" title="Nowakowski TJ et al. 2017.
+                 Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science."
+                 data-content="View publication from this dataset"><i class="fas fa-file-alt"
+                 aria-hidden="true"></i></a>&nbsp;
+                <a href="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000989"
+                target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top"
+                data-container="body" data-html="true" title="<img
+                src='https://www.ncbi.nlm.nih.gov/projects/gap/images/dbGaP_logo_final.jpg' style='height:
+                2em;'> View phs000989" data-content="Click database icon to view on dbGaP"><i class="fas fa-database"
+                aria-hidden="true"></i></a></td>
                 <td class="text-dark-blue text-center"><i class="fas fa-braille fa-lg" aria-hidden="true"></i></td>
                 <td class="text-dark-pink text-center"></td>
                 <td class="text-dark-pink text-center"></td>
                 <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td>
                 <td class="text-light-blue text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-blue text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-light-green text-center"></td>
                 <td class="text-orange text-center"></td>
                 <td class="text-dark-blue text-center"></td>