d5007f4b43d2ae5c833533fdba6388d8a19e81a8 ccpowell Fri Mar 22 13:20:37 2019 -0700 Editing announcement for Mastermind release, refs #21895 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 28e4e56..9a763b4 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -45,49 +45,48 @@ <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> <a name="032619"></a> <h2> Mar, 26 2019 New Genomenon Mastermind Variants track for Human (hg19) </h2> <p> We are pleased to announce the release of the Genomenon Mastermind Variants track for the -<a href="../cgi-bin/hgGateway?db=hg19" target="_blank">hg19/GRCh37 assembly</a>. This track is -composed of variants found in scientific publications collected by <a -href="https://www.genomenon.com/" target="_blank">Genomenon Mastermind</a>. Mastermind uses -software that searches for disease-gene-variant associations in the scientific literature. The -genome browser track shows only if a variant has been indexed by the search engine. -Genomenon Mastermind Genomic Search Engine is a commercial database of variants likely to be -mentioned in full-text scientific articles. +<a href="../cgi-bin/hgTracks?db=hg19&position=chr21%3A33032078-33032099&hideTracks=1&varsInPubs=show&mastermind=pack&knownGene=pack" +target="_blank">hg19/GRCh37 assembly</a>. This track is +composed of variants found in full-text scientific publications collected by <a +href="https://www.genomenon.com/mastermind" target="_blank">Genomenon Mastermind</a>. Mastermind +uses software that searches for disease-gene-variant associations in the scientific literature to +generate a commercial database. </p> <p> -Genomic locations of variants are labeled with the nucleotide change. Hover over the features to -see the gene, the amino acid change, and the support scores. All -other information is shown on the respective Mastermind variant detail page, accessible via the -"Link to Mastermind" at the top of the details page. +Genomic locations of variants are labeled with the nucleotide change (C>A) where one can hover +over the features to see the gene impacted, the specific amino acid change, and the related support +scores (SOD1:A2E - 3/3/3). By clicking an item a link titled "Protein change and link to details" +provides access to the respective Mastermind variant database page for further information. More information about this track and its display can be found on the <a href="../cgi-bin/hgTrackUi?db=hg19&g=mastermind" target="_blank">track description</a> page. <p> -We would like to give a big thank you to Mark Kiel, Steve Schwartz and Clayton Wheeler from +We would like to thank Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making this data available as well as Max Haeussler, Conner Powell and the rest of the -UCSC Genome Browser team for bringing this track to life. +UCSC Genome Browser team. </p> <a name="030519"></a> <h2> Mar. 11, 2019 Addition of GRCh38 patch sequences to hg38 </h2> <p> We are pleased to announce the addition of GRCh38 patches to the GRCh38/hg38 database. <a href="https://www.ncbi.nlm.nih.gov/grc/human" target="_blank">Without a release date</a> for the next coordinate-changing assembly, incorporating these sequences is an important step towards providing the most up to date human assembly.</p> <p> This release includes new tracks visualizing patch sequences; the <a