7584423dc9148b9d1ca4203a3785fb471220ddea lrnassar Wed Mar 20 13:38:42 2019 -0700 Adding links to FAQgenes page from many genes track descriptions #22696 diff --git src/hg/makeDb/trackDb/augustusGene.html src/hg/makeDb/trackDb/augustusGene.html index 46bac0f..619c816 100644 --- src/hg/makeDb/trackDb/augustusGene.html +++ src/hg/makeDb/trackDb/augustusGene.html @@ -1,23 +1,27 @@

Description

This track shows ab initio predictions from the program AUGUSTUS (version 3.1). The predictions are based on the genome sequence alone.

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+For more information on the different gene tracks, see our Genes FAQ.

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Methods

Statistical signal models were built for splice sites, branch-point patterns, translation start sites, and the poly-A signal. Furthermore, models were built for the sequence content of protein-coding and non-coding regions as well as for the length distributions of different exon and intron types. Detailed descriptions of most of these different models can be found in Mario Stanke's dissertation. This track shows the most likely gene structure according to a Semi-Markov Conditional Random Field model. Alternative splicing transcripts were obtained with a sampling algorithm (--alternatives-from-sampling=true --sample=100 --minexonintronprob=0.2 --minmeanexonintronprob=0.5 --maxtracks=3 --temperature=2).