7584423dc9148b9d1ca4203a3785fb471220ddea lrnassar Wed Mar 20 13:38:42 2019 -0700 Adding links to FAQgenes page from many genes track descriptions #22696 diff --git src/hg/makeDb/trackDb/augustusGene.html src/hg/makeDb/trackDb/augustusGene.html index 46bac0f..619c816 100644 --- src/hg/makeDb/trackDb/augustusGene.html +++ src/hg/makeDb/trackDb/augustusGene.html @@ -1,23 +1,27 @@ <h2>Description</h2> <p> This track shows <i>ab initio</i> predictions from the program <a href="http://bioinf.uni-greifswald.de/augustus/" target="_blank">AUGUSTUS</a> (version 3.1). The predictions are based on the genome sequence alone. </p> +<p> +For more information on the different gene tracks, see our <a target=_blank +href="/FAQ/FAQgenes.html">Genes FAQ</a>.</p> + <h2>Methods</h2> <p> Statistical signal models were built for splice sites, branch-point patterns, translation start sites, and the poly-A signal. Furthermore, models were built for the sequence content of protein-coding and non-coding regions as well as for the length distributions of different exon and intron types. Detailed descriptions of most of these different models can be found in Mario Stanke's <a href="http://ediss.uni-goettingen.de/handle/11858/00-1735-0000-0006-B3F8-4" target="_blank">dissertation</a>. This track shows the most likely gene structure according to a Semi-Markov Conditional Random Field model. Alternative splicing transcripts were obtained with a sampling algorithm (<tt>--alternatives-from-sampling=true --sample=100 --minexonintronprob=0.2 --minmeanexonintronprob=0.5 --maxtracks=3 --temperature=2</tt>).