7584423dc9148b9d1ca4203a3785fb471220ddea
lrnassar
  Wed Mar 20 13:38:42 2019 -0700
Adding links to FAQgenes page from many genes track descriptions #22696

diff --git src/hg/makeDb/trackDb/genscan.html src/hg/makeDb/trackDb/genscan.html
index accaa3a..c1ba117 100644
--- src/hg/makeDb/trackDb/genscan.html
+++ src/hg/makeDb/trackDb/genscan.html
@@ -1,63 +1,67 @@
 <h2>Description</h2>
 
 <p>
 This track shows predictions from the
 <a href="http://genes.mit.edu/GENSCAN.html" target="_blank">Genscan</a> program
 written by <a href="http://genes.mit.edu/burgelab/" target="_blank">Chris Burge</a>.
 The predictions are based on transcriptional, translational and donor/acceptor
 splicing signals as well as the length and compositional distributions of exons,
 introns and intergenic regions.
 </p>
 
+<p>
+For more information on the different gene tracks, see our <a target=_blank 
+href="/FAQ/FAQgenes.html">Genes FAQ</a>.</p>
+
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 This track follows the display conventions for
 <a href="/goldenPath/help/hgTracksHelp.html#GeneDisplay" target="_blank">gene prediction
 tracks</a>.
 </p>
 
 <p>
 The track description page offers the following filter and configuration
 options:
 <ul>
 <li><b>Color track by codons:</b> Select the <em>genomic codons</em> option
 to color and label each codon in a zoomed-in display to facilitate validation
 and comparison of gene predictions. Go to the
 <a HREF="/goldenPath/help/hgCodonColoring.html" target="_blank">
 Coloring Gene Predictions and Annotations by Codon</a> page for more
 information about this feature.</li>
 </ul>
 </p>
 
 <h2>Methods</h2>
 
 <p>
 For a description of the Genscan program and the model that underlies it,
 refer to Burge and Karlin (1997) in the References section below.
 The splice site models used are described in more detail in Burge (1998)
 below.
 </p>
 
 <h2>Credits</h2>
 
 Thanks to Chris Burge for providing the Genscan program.
 
 <h2>References</h2>
 
 <p>
 Burge C.
 Modeling Dependencies in Pre-mRNA Splicing Signals.
 In: Salzberg S, Searls D, Kasif S, editors.
 <a href="https://www.elsevier.com/books/computational-methods-in-molecular-biology/salzberg/978-0-444-82875-0"
 target="_blank">Computational Methods in Molecular Biology</a>.
 Amsterdam: Elsevier Science; 1998. p. 127-163.
 </p>
 
 <p>
 Burge C, Karlin S.
 <a href="https://www.sciencedirect.com/science/article/pii/S0022283697909517" target="_blank">
 Prediction of complete gene structures in human genomic DNA</a>.
 <em>J. Mol. Biol.</em> 1997 Apr 25;268(1):78-94.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/9149143" target="_blank">9149143</a>
 </p>