b45d635495635e7a591fd00a0a1b1b5e404d7d80 mspeir Wed Mar 20 17:26:11 2019 -0700 Adding links to dataset summary pages for newly public datasets. refs #23156 diff --git src/hg/cirm/gateway/htdocs/projects.html src/hg/cirm/gateway/htdocs/projects.html index 1b6ea1e..7ea8a07 100755 --- src/hg/cirm/gateway/htdocs/projects.html +++ src/hg/cirm/gateway/htdocs/projects.html @@ -1,28 +1,29 @@ <!DOCTYPE html> <!--#set var="TITLE" value="CIRM Stem Cell Hub Projects" --> <!--#set var="ROOT" value="" --> <!--#include virtual="$ROOT/inc/header.html" --> <div class="cirm-page-body"> <div class="cirm-page-title back-light-blue" style="//background: #1E90FF;"> <h5 class="cirm-page-title-text">Projects initiated and funded by the CESCG</h5> </div> <!--<p class="lead">Research themes</p>--> -<div class="table-responsive scrollable-table" style="/*padding-right: 80px;*/"> +<!--<div class="table-responsive scrollable-table" style="/*padding-right: 80px;*/">--> +<div class="" style="/*padding-right: 80px;*/"> <div class="row" style="background:#fff; border:1px solid #ed217c; padding: 10px; margin: 10px 0; position: relative"> <div class="col-12"> <div class="row"> <p class="lead text-dark-blue">Legend:</p> </div> <div class="row"> <div class="col-4"> <i class="fas fa-braille fa-lg text-dark-blue" aria-hidden="true"></i> - Plate-based sequencing (e.g. SMART-seq2) </div> <div class="col-4"> <i class="fas fa-tint fa-lg text-dark-blue" aria-hidden="true"></i> - Droplet-based sequencing (e.g. 10X) </div> @@ -262,35 +263,35 @@ <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"><a href="https://kriegsteinlab.ucsf.edu/" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Arnold Kriegstein, UCSF" data-content="The Kriegstein lab is using single-cell RNA profiling to learn about the diverse population of cortical neurons.">Kriegstein</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i></td> - <td class="datasetid">kriegsteinBrainOrganoids1 <i class="fas fa-info-circle" + <td class="datasetid"><a href="/d/kriegsteinBrainOrganoids1">kriegsteinBrainOrganoids1</a> <i class="fas fa-info-circle" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Single-cell Brain Organoids" data-content="874 iPSC-derived brain organoid samples processed - via single-cell RNA." aria-hidden="true"></i></td> + via single-cell RNA-seq." aria-hidden="true"></i></td> <td class="text-dark-blue text-center"><i class="fas fa-braille fa-lg" aria-hidden="true"></i></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> @@ -328,31 +329,31 @@ <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"><a href="" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content=""></a></td> - <td class="datasetid">kriegstein6k <i class="fas fa-info-circle" aria-hidden="true" + <td class="datasetid"><a href="/d/kriegstein6k">kriegstein6k</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="RNA-seq from 6,000 primary cells at UCSF."></i></td> <td class="text-dark-blue text-center"><i class="fas fa-braille fa-lg" aria-hidden="true"></i></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> @@ -434,31 +435,31 @@ <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> - <td class="datasetid">quakeGlioblastomaGeo1 <i class="fas fa-info-circle" aria-hidden="true" + <td class="datasetid"><a href="/d/quakeGlioblastomaGeo1">quakeGlioblastomaGeo1</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Characterizing the effects of glioblastoma on normal brain."></i><br> <a href="https://www.ncbi.nlm.nih.gov/pubmed/29091775/" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Darmanis, S., et al. (2017). Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma. Cell Rep." data-content="View publication from this dataset"><i class="fas fa-file-alt" aria-hidden="true"></i></a> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84465" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: @@ -772,54 +773,54 @@ <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"><a href="https://cornlab.com/" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Jacob Corn, UC Berkeley" data-content="The Corn lab is investigating fixing sickle cell anemia with CRISPR. Aim 1 of the Corn lab is to use RNA-seq to explore erythroid (red blood cell) maturation. Aim 2 is using boutique DNA-seq methods to investigate effets of using CRISPR.">Corn</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i></td> - <td class="datasetid">cornErythroidMaturation1 <i class="fas fa-info-circle" aria-hidden="true" + <td class="datasetid"><a href="/d/cornErythroidMaturation1">cornErythroidMaturation1</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Investigating erythoid maturation with RNA-seq."></i></td> <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> - <td class="datasetid">cornOffTarget <i class="fas fa-info-circle" aria-hidden="true" + <td class="datasetid"><a href="/d/cornOffTarget">cornOffTarget</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Investigating CRISPR off-target cleavage sites using GUIDE-seq, Amplicon-seq and Capture-seq."></i></td> <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> @@ -1054,72 +1055,72 @@ <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> - <!-- <tr> <td></td> <td class="lab text-nowrap"></td> - <td class="datasetid"><a href="/d/quakeFetalPancreasSpatial">quakeFetalPancreasSpatial</a> + <!--<td class="datasetid"><a href="/d/quakeFetalPancreasSpatial">quakeFetalPancreasSpatial</a>--> + <td class="datasetid">quakeFetalPancreasSpatial <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" - data-content="Single cell transcriptome analysis of human pancreas - reveals transcriptional signatures of aging and somatic mutation patterns." - ><></i></a><br> + data-content=""></i> + <!-- + <br> <a href="https://www.ncbi.nlm.nih.gov/pubmed/26060301" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Enge M et al. 2017. Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Pattern. Cell." data-content="View publication from this dataset"><i class="fas fa-file-alt" aria-hidden="true"></i></a> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81547" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: 2em;'>View GSE81547" data-content="Click database icon to view on GEO."><i class="fas fa-database" aria-hidden="true"></i></a> + --> </td> - <td class="text-dark-blue text-center"><i class="fas fa-braille fa-lg" aria-hidden="true"></i></td> + <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> - <td class="text-light-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> + <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> - <td class="text-dark-blue text-center"></td> + <td class="text-dark-blue text-center"><i class="fas fa-square" aria-hidden="true"></i></td> </tr> - --> <tr> <td colspan="100%">Therapeutics</td> </tr> <tr class="last-row"> <td></td> <td class="lab text-nowrap"><a href="http://www.scripps.edu/loring/" target="_blank" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Jeanne Loring, Scripps" data-content="The Loring lab is carrying out preclinical studies to develop an autologous cell therapy for Parkinson's disease.">Loring</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i></td> <td class="datasetid">loringParkinsons1 <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="