e1ace7526b7d16654717065227a2d1e6f3fe4654
hiram
  Tue Mar 26 20:12:20 2019 -0700
adding testing for hubApi refs #18869

diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile
index f8a8f05..647e801 100644
--- src/hg/hubApi/tests/makefile
+++ src/hg/hubApi/tests/makefile
@@ -1,7 +1,125 @@
 
-test::
-	@./jsonConsumer.pl 2> /dev/null | gzip -c > testOutput.json.gz
-	@zdiff testOutput.json.gz expected.json.gz
+test::	test0 test1 test2 test3 test4 test5 test6 test7 test8 test9 test10 \
+	test11 test12 test13 test14 test15 test16 test17 test18 test19 test20
 
 clean::
-	rm -f testOutput.json.gz
+	rm -f testOutput/*.gz
+
+excludeLines = downloadTime|downloadTimeStamp
+
+# test::
+# 	@./jsonConsumer.pl 2> /dev/null | gzip -c > testOutput.json.gz
+# 	@zdiff testOutput.json.gz expected.json.gz
+
+# testing /list/noSubCommand, /list/publicHubs and /list/ucscGenomes
+test0:
+	@./jsonConsumer.pl 2> /dev/null | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /list/hubGenomes
+test1:
+	@./jsonConsumer.pl -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -endpoint="/list/hubGenomes" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /list/tracks?genome=_araTha1
+test2:
+	@./jsonConsumer.pl -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -endpoint="/list/tracks" -genome="_araTha1" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /list/tracks?db=ce11
+test3:
+	@./jsonConsumer.pl -endpoint="/list/tracks" -db="ce11" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# TBD XXX testing /list/chromosomes with a hub
+# testing /list/chromosomes?db=ce11
+test4:
+	@./jsonConsumer.pl -endpoint="/list/chromosomes" -db="ce11" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# TBD XXX testing /list/chromosomes with a hub and track
+# testing /list/chromosomes?db=ce11&track=gold
+test5:
+	@./jsonConsumer.pl -endpoint="/list/chromosomes" -db="ce11" -track="gold" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/sequence?db=ce11&chrom=chrM
+test6:
+	@./jsonConsumer.pl -endpoint="/getData/sequence" -db="ce11" -chrom="chrM" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/sequence?db=ce11&chrom=chrM&start=1&end=128
+test7:
+	@./jsonConsumer.pl -endpoint="/getData/sequence" -db="ce11" -chrom="chrM" -start=1 -end=128 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track?db=ce11&track=gold
+test8:
+	@./jsonConsumer.pl -endpoint="/getData/track" -db="ce11" -track="gold" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track?db=ce11&track=gold&chrom=chrM
+test9:
+	@./jsonConsumer.pl -endpoint="/getData/track" -db="ce11" -track="gold" -chrom="chrM" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track?db=ce11&track=gold&chrom=chrI&start=1&end=1024
+test10:
+	@./jsonConsumer.pl -endpoint="/getData/track" -db="ce11" -track="gold" -chrom="chrI" -start=1 -end=1024 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Plants &track=gold assembly hub
+test11:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="_araTha1" -track="assembly_" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Plants &track=gold&chrom=chrM assembly hub
+test12:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="_araTha1" -track="assembly_" -chrom="chrCp" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Plants &track=gold&chrom=chrI&start=1&end=1024 assembly hub
+test13:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="_araTha1" -track="assembly_" -chrom="chrCp" -start=1 -end=1024 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Bejerano &track=ultraConserved  track hub
+test14:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt" -genome="hg19" -track="ultraConserved" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Bejerano &track=ultraConserved&chrom=chr1  track hub
+test15:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt" -genome="hg19" -track="ultraConserved" -chrom="chr1" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /getData/track? hubUrl Bejerano &track=ultraConserved&chrom=chr1&start=N&end=M  track hub
+test16:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt" -genome="hg19" -track="ultraConserved" -chrom="chr1" -start=10600000 -end=10800000 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# wiggle data from a track hub
+# testing /getData/track? hubUrl Plants &track=gc5Base_&chrom=chrCp&start=1&end=1024 assembly hub
+test17:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="_araTha1" -track="gc5Base_" -chrom="chrCp" -start=1 -end=1024 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# bigWig data from a database
+# /getData/track? db=galGal6 &track=gc5BaseBw&chrom=chr1&start=1&end=1024
+test18:
+	@./jsonConsumer.pl -endpoint="/getData/track" -db="galGal6" -track="gc5BaseBw" -chrom="chr1" -start=1 -end=1024 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# bigBed data from a database
+# /getData/track? db=galGal6 &track=gc5BaseBw&chrom=chr1&start=1&end=1024
+test19:
+	@./jsonConsumer.pl -endpoint="/getData/track" -db="galGal6" -track="ncbiRefSeqOther" -chrom="chr1" -start=750000 -end=55700000 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# generate an error: ask for non-existent chrom in a track hub
+# /getData/track? hubUrl Plants &track=assembly_&chrom=chrI&start=1&end=14309681
+test20:
+	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="_araTha1" -track="assembly_" -chrom="chrI" -start=1 -end=14309681 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+