915a13561ba56819d0cc8fad2c8ea00342d5e933 jnavarr5 Wed Apr 24 09:44:02 2019 -0700 Updating broken genscan links for echTel1, uiLinks cronjob. diff --git src/hg/makeDb/trackDb/genscan.html src/hg/makeDb/trackDb/genscan.html index c1ba117..20dd3c5 100644 --- src/hg/makeDb/trackDb/genscan.html +++ src/hg/makeDb/trackDb/genscan.html @@ -1,67 +1,67 @@

Description

This track shows predictions from the -Genscan program -written by Chris Burge. +Genscan program +written by Chris Burge. The predictions are based on transcriptional, translational and donor/acceptor splicing signals as well as the length and compositional distributions of exons, introns and intergenic regions.

For more information on the different gene tracks, see our Genes FAQ.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks.

The track description page offers the following filter and configuration options:

Methods

For a description of the Genscan program and the model that underlies it, refer to Burge and Karlin (1997) in the References section below. The splice site models used are described in more detail in Burge (1998) below.

Credits

Thanks to Chris Burge for providing the Genscan program.

References

Burge C. Modeling Dependencies in Pre-mRNA Splicing Signals. In: Salzberg S, Searls D, Kasif S, editors. Computational Methods in Molecular Biology. Amsterdam: Elsevier Science; 1998. p. 127-163.

Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 1997 Apr 25;268(1):78-94. PMID: 9149143