233bc1d31d1db799ea621f75bd2a95ba78ab690e dschmelt Mon Apr 8 14:28:23 2019 -0700 Fixing example numbering and anchors #23271 diff --git src/hg/htdocs/goldenPath/help/bigGenePred.html src/hg/htdocs/goldenPath/help/bigGenePred.html index 2a76c29..d5f405b 100755 --- src/hg/htdocs/goldenPath/help/bigGenePred.html +++ src/hg/htdocs/goldenPath/help/bigGenePred.html @@ -236,31 +236,31 @@
  • Put your binary indexed file in a web-accessible location. See the hosting section for more information.
  • View your dataset in the Browser by entering your data URL in the bigDataUrl field of the URL. 
    http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hgct_customText=track%20type=bigGenePred%20bigDataUrl=https://hgwdev.gi.ucsc.edu/~dschmelt/wgEncodeGencodeCompV28.bgp
    You can also add your data in the custom track management page. This allows you to set position, configuration options, and write a more complete desciption. If you want to see codons, you will have to right click to configure codon view or set this option using the baseColorDefault=genomicCodons code as is done below. 
    browser position chr10:67,884,600-67,884,900 
 track type=bigGenePred baseColorDefault=genomicCodons name="bigGenePred Example Four" description="BGP Made from genePred" visibility=pack bigDataUrl=https://hgwdev.gi.ucsc.edu/~dschmelt/wgEncodeGencodeCompV28.bgp

    • Sharing your data with others

    If you would like to share your bigGenePred data track with a colleague, learn how to create a URL -link to your data by looking at Example #6.

    +link to your data by looking at Example #6.

    Extracting data from bigBed format

    Because the bigGenePred files are an extension of bigBed files, which are indexed binary files, it can be difficult to extract data from them. UCSC has developed the following programs to assist in working with bigBed formats, available from the binary utilities directory.