233bc1d31d1db799ea621f75bd2a95ba78ab690e dschmelt Mon Apr 8 14:28:23 2019 -0700 Fixing example numbering and anchors #23271 diff --git src/hg/htdocs/goldenPath/help/bigMaf.html src/hg/htdocs/goldenPath/help/bigMaf.html index 5bba8ec..d097144 100755 --- src/hg/htdocs/goldenPath/help/bigMaf.html +++ src/hg/htdocs/goldenPath/help/bigMaf.html @@ -175,31 +175,31 @@ above): <pre><code>bedToBigBed -type=bed3+1 -tab -as=bigMaf.as bigMaf.txt hg38.chrom.sizes bigMaf.bb</code></pre></li> <li> Move the newly created bigMaf file (<em>bigMaf.bb</em>) to a web-accessible location (<em>Step 7</em>, above).</li> <li> Construct a track line that points to the bigMaf file (<em>Step 8</em>, above).</li> <li> Create the custom track on the human assembly hg38 (Dec. 2013), and view it in the Genome Browser (<em>step 9</em>, above).</li> </ol> <h2>Sharing your data with others</h2> <p> If you would like to share your bigMaf data track with a colleague, learn how to create a URL by -looking at Example 11 on <a href="customTrack.html#EXAMPLE11">this page</a>.</p> +looking at Example 6 on <a href="customTrack.html#EXAMPLE6">this page</a>.</p> <h2>Extracting data from the bigMaf format</h2> <p> Because bigMaf files are an extension of bigBed files, which are indexed binary files, it can be difficult to extract data from them. UCSC has developed the following programs to assist in working with bigBed formats, available from the <a href="http://hgdownload.soe.ucsc.edu/admin/exe/">binary utilities directory</a>.</p> <ul> <li> <code>bigBedToBed</code> — converts a bigBed file to ASCII BED format.</li> <li> <code>bigBedSummary</code> — extracts summary information from a bigBed file.</li> <li> <code>bigBedInfo</code> — prints out information about a bigBed file.</li> </ul>