3c3c42b1f7491b065fe19858f24d91fd93524fe5
hiram
Mon Apr 8 14:37:27 2019 -0700
added support for PSL types and remove reference to top-level explore tools refs #18869
diff --git src/hg/htdocs/goldenPath/help/api.html src/hg/htdocs/goldenPath/help/api.html
index 65231a9..f566a89 100755
--- src/hg/htdocs/goldenPath/help/api.html
+++ src/hg/htdocs/goldenPath/help/api.html
@@ -21,44 +21,36 @@
What is JSON data ?
JSON data is a data transfer syntax from a data provider to a data consumer.
See also: JSON Introduction
What is the access URL ?
-The gateway html page to the interface is available at
-api-test.gi.ucsc.edu. This page can be used
-to explore track hubs, assembly hubs, and UCSC browser data resources.
-Example URL links for JSON output are provided on that page for track
-types that are currently supported for data output. Work is underway
-to provide access to additional data track types.
-
-
This access url: https://api-test.gi.ucsc.edu/ is used to access
the endpoint functions. For example:
wget -O- 'https://api-test.gi.ucsc.edu/list/publicHubs'
+
What type of data can be accessed ?
The following data sets can be accessed at this time:
- Listing of available public hubs
- Listing of available UCSC browser genome assemblies
- List genomes from a specified assembly or track hub
- List available data tracks from a specified hub or UCSC browser genome assembly (see also: track definition help)
- List of chromosomes contained in an assembly hub or UCSC browser genome assembly.
- List of chromosomes contained in a specific track of an assembly or track hub or UCSC browser genome assembly.
- Return DNA sequence from an assembly hub 2bit file, or UCSC genome browser assembly
- Return track data from a specified assembly or track hub or UCSC genome browser assembly
@@ -145,30 +137,31 @@
Supported track types, at this time (April 2019), for getData functions
Example data access
Listing functions
- list public hubs - api.genome.ucsc.edu/list/publicHubs
- list UCSC database genomes - api.genome.ucsc.edu/list/ucscGenomes
- list genomes from specified hub - api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt
- list tracks from specified hub and genome - api.genome.ucsc.edu/list/tracks?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=_araTha1
- list tracks from UCSC database genome - api.genome.ucsc.edu/list/tracks?db=ce11