f01366a14e4574f413ed9b55a0d1c36376074dd8 hiram Tue Apr 9 14:43:00 2019 -0700 adding an allowedBigBedType() function to recognize that set of big types refs #18869 diff --git src/hg/hubApi/dataApi.h src/hg/hubApi/dataApi.h index befb808..679f861 100644 --- src/hg/hubApi/dataApi.h +++ src/hg/hubApi/dataApi.h @@ -1,105 +1,110 @@ /* dataApi.h - functions for API access to UCSC data resources */ #ifndef DATAAPH_H #include "common.h" #include "linefile.h" #include "hash.h" #include "options.h" #include "jksql.h" #include "htmshell.h" #include "web.h" #include "cheapcgi.h" #include "cart.h" #include "hui.h" #include "udc.h" #include "knetUdc.h" #include "genbank.h" #include "trackHub.h" #include "hgConfig.h" #include "hCommon.h" #include "hPrint.h" #include "bigWig.h" #include "hubConnect.h" #include "obscure.h" #include "errCatch.h" #include "vcf.h" #include "bedTabix.h" #include "bamFile.h" #include "jsonParse.h" #include "jsonWrite.h" #include "chromInfo.h" #include "wiggle.h" #include "hubPublic.h" #ifdef USE_HAL #include "halBlockViz.h" #endif #define MAX_PATH_INFO 32 /* limit amount of output to a maximum to avoid overload */ extern int maxItemsOutput; /* can be set in URL maxItemsOutput=N */ /* for debugging purpose, current bot delay value */ extern int botDelay; boolean debug; /* can be set in URL debug=1, to turn off: debug=0 */ /* functions in hubApi.c */ struct hubPublic *hubPublicDbLoadAll(); struct dbDb *ucscDbDb(); /* return the dbDb table as an slList */ /* functions in apiUtils.c */ void apiErrAbort(char *format, ...); /* Issue an error message in json format, and exit(0) */ struct jsonWrite *apiStartOutput(); /* begin json output with standard header information for all requests */ extern char *jsonTypeStrings[]; #define JSON_STRING 0 // "string", /* type 0 */ #define JSON_NUMBER 1 // "number", /* type 1 */ #define JSON_OBJECT 2 // "object", /* type 2 */ #define JSON_ARRAY 3 // "array", /* type 3 */ #define JSON_BOOLEAN 4 // "boolean", /* type 4 */ #define JSON_NULL 5 // "null" /* type 5 */ #define JSON_DOUBLE 6 // UCSC json type double /* type 6 */ int autoSqlToJsonType(char *asType); /* convert an autoSql field type to a Json type */ int tableColumns(struct sqlConnection *conn, struct jsonWrite *jw, char *table, char ***nameReturn, char ***typeReturn, int **jsonTypes); /* return the column names, the MySQL data type, and json data type * for the given table return number of columns (aka 'fields') */ struct trackHub *errCatchTrackHubOpen(char *hubUrl); /* use errCatch around a trackHub open in case it fails */ struct trackDb *obtainTdb(struct trackHubGenome *genome, char *db); /* return a full trackDb fiven the hub genome pointer, or ucsc database name */ struct trackDb *findTrackDb(char *track, struct trackDb *tdb); /* search tdb structure for specific track, recursion on subtracks */ struct bbiFile *bigFileOpen(char *trackType, char *bigDataUrl); /* open bigDataUrl for correct trackType and error catch if failure */ int chromInfoCmp(const void *va, const void *vb); /* Compare to sort based on size */ +boolean allowedBigBedType(char *type); +/* return TRUE if the big* type is to be supported + * add to this list as the big* supported types are expanded + */ + /* ######################################################################### */ /* functions in getData.c */ void apiGetData(char *words[MAX_PATH_INFO]); /* 'getData' function, words[1] is the subCommand */ /* ######################################################################### */ /* functions in list.c */ void apiList(char *words[MAX_PATH_INFO]); /* 'list' function words[1] is the subCommand */ #endif /* DATAAPH_H */