fe3ea6f0a43b7dcfe2ea05a13c8a053be2ca793d jnavarr5 Fri Apr 12 14:23:10 2019 -0700 Adding TCP examples for hgdownload-euro on the GBiC help page, refs #20551 diff --git src/hg/htdocs/goldenPath/help/gbic.html src/hg/htdocs/goldenPath/help/gbic.html index 3656deb..7324445 100755 --- src/hg/htdocs/goldenPath/help/gbic.html +++ src/hg/htdocs/goldenPath/help/gbic.html @@ -113,38 +113,42 @@ set up in Germany for users in Europe. You can change the <code>/usr/local/apache/cgi-bin/hg.conf</code> genome-mysql.soe.ucsc.edu lines to genome-euro-mysql.soe.ucsc.edu in order to get better performance. You can then use the program to download assemblies of interest to your local Genome Browser, which will result in performance at least as fast as the UCSC site. </p> <h3>Network requirements</h3> <p> Your network firewall must allow outgoing connections to the following servers and ports: <ul> <li>MySQL connections, used to load tracks not local to your computer: <ul> <li>US server: Port 3306 on genome-mysql.soe.ucsc.edu (128.114.119.174)</li> <li>European server: Port 3306 on genome-euro-mysql.soe.ucsc.edu (129.70.40.120)</li> - </ul> - <li> - TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163), used by rsync to download track - data</li> - <li> - TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163), used to download html descriptions on - the fly</li> - </ul></li></p> + </ul></li> + <li> Rsync, used to download track data: + <ul> + <li>US server: TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> + <li>European server: TCP port 873 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> + </ul></li> + <li>Download HTML descriptions on the fly: + <ul> + <li>US server: TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> + <li>European server: TCP port 80 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> + </ul></li> + </ul></p> <a name='gbic-commands'></a> <h2>GBiC Commands</h2> <p> The first argument of the program is called <code>command</code> in the following section of this document. The first command that you will need is <code>install</code>, which installs the Genome Browser dependencies, binary files and basic MySQL infrastructure: </p> <pre><code>sudo bash browserSetup.sh install</code></pre> <p> There are a number of options supported by the GBiC program. In all cases, options must be specified before the command.