1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9
markd
  Tue Apr 9 15:10:40 2019 -0700
import of GENCODE V30, V30lift37 and VM21

diff --git src/hg/makeDb/doc/hg38/hg38.txt src/hg/makeDb/doc/hg38/hg38.txt
index f5c9e95..78f04eb 100644
--- src/hg/makeDb/doc/hg38/hg38.txt
+++ src/hg/makeDb/doc/hg38/hg38.txt
@@ -7076,15 +7076,46 @@
 
     # Edit human/hg38/wgEncodeGencodeSuper.html and update 'Release Notes'
     # to describe new release. [ONLY if it's going to be pushed]
 
     # edit human/hg38/trackDb.wgEncode.ra to add new .ra file include
     make DBS=hg38
 
     # edit  all.joiner to add ~/tmp/gencodeV29.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV29
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
 
 #########################################################################
+2019-04-08: import of UCSC GENCODE group processing of GENCODE V30 (markd)
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/hg38/bed/gencodeV30
+    pushd /hive/data/genomes/hg38/bed/gencodeV30
+
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 30 96 'Apr 2019'
+
+    # Edit human/hg38/wgEncodeGencodeSuper.html and update 'Release Notes'
+    # to describe new release. [ONLY if it's going to be pushed]
+
+    # edit human/hg38/trackDb.gencode.ra to add new .ra file include
+    make DBS=hg38
+
+    ## only if being pushed to RR:
+    # edit all.joiner to add ~/tmp/gencodeV30.joiner
+    # verify with:
+    pushd /hive/data/genomes/hg38/bed/gencodeV30
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # commit all
+
+#########################################################################