b089078d975056489840af38badc2598592bc47f dschmelt Mon Apr 15 14:15:57 2019 -0700 Fixing weird double quotes character #23317 diff --git src/hg/htdocs/goldenPath/help/bigGenePred.html src/hg/htdocs/goldenPath/help/bigGenePred.html index ec79cb3..d911d7e 100755 --- src/hg/htdocs/goldenPath/help/bigGenePred.html +++ src/hg/htdocs/goldenPath/help/bigGenePred.html @@ -223,31 +223,31 @@
gtfToGenePred -genePredExt bigGenePredExample4.gtf example4.genePred
genePredToBigGenePred example4.genePred bigGenePred.txt
wget http://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes
wget http://genome.ucsc.edu/goldenPath/help/examples/bigGenePred.as
bedToBigBed -type=bed12+8 -tab -as=bigGenePred.as ex4BigGenePred.txt hg38.chrom.sizes bigGenePred.bb
http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hgct_customText=track%20type=bigGenePred%20bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigGenePred.bbYou can also add your data in the custom track management page. This allows you to set position, configuration options, and write a more complete desciption. If you want to see codons, you can right click, then click configure codon view or set these options using the
baseColorDefault=genomicCodons
code as is done below.
browser position chr19:44905795-44909393
track type=bigGenePred baseColorDefault=genomicCodons name="bigGenePred Example Four" description="BGP Made from genePred" visibility=pack bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigGenePred.bb
If you would like to share your bigGenePred data track with a colleague, learn how to create a URL link to your data by looking at Example #6.