3a608ab4a201533404957194219bc57f9b5a40c4 brianlee Wed May 15 12:11:20 2019 -0700 Updating interact example after getting blessing from Kate diff --git src/hg/htdocs/goldenPath/help/interact.html src/hg/htdocs/goldenPath/help/interact.html index 2244830..3050d96 100755 --- src/hg/htdocs/goldenPath/help/interact.html +++ src/hg/htdocs/goldenPath/help/interact.html @@ -100,31 +100,31 @@ In this example, you will create an interact custom track using example SNP/gene interaction data in multiple tissues. This example uses the interaction coloring and directionality features of the interact track type. <ol> <li>Paste the following track line into the <a href="../../cgi-bin/hgCustom?db=hg19">custom track management page</a> for the human assembly hg19. <pre><code> track type=interact name="interact Example One" description="An interact file" interactDirectional=true maxHeightPixels=50:100:200 visibility=full browser position chr12:40,560,500-40,660,499 #chrom chromStart chromEnd name score value exp color sourceChrom sourceStart sourceEnd sourceName sourceStrand targetChrom targetStart targetEnd targetName targetStrand chr12 40572709 40618813 rs7974522/LRRK2/muscleSkeletal 0 0.624 muscleSkeletal #7A67EE chr12 40572709 40572710 rs7974522 . chr12 40618812 40618813 LRRK2 + chr12 40579899 40618813 rs17461492/LRRK2/muscleSkeletal 0 0.624 muscleSkeletal #7A67EE chr12 40579899 40579900 rs17461492 . chr12 40618812 40618813 LRRK2 + chr12 40614433 40618813 rs76904798/LRRK2/nerveTibial 0 0.625 nerveTibial #FFD700 chr12 40614433 40614434 rs76904798 . chr12 40618812 40618813 LRRK2 + -chr12 40618812 40652520 rs2723264/LRRK2/lung 0 1.839 lung #9ACD32 chr12 40652519 40652520 rs76904798 . chr12 40618812 40618813 LRRK2 + +chr12 40618812 40652520 rs2723264/LRRK2/lung 0 1.839 lung #9ACD32 chr12 40652519 40652520 rs2723264 . chr12 40618812 40618813 LRRK2 + </code></pre></li> <li>Click the "submit" button.</li> </ol> </p> <ol> <img width="1080" height="148" src="../../images/interactExample1.png"> </ol> <p> After the file loads in the Genome Browser, you should see four interactions displayed; four variants interacting with the same gene (LRRK2). Hovering the mouse over the curve peak of an interaction will display the interaction name (SNP/gene/tissue). Hovering over an interaction end will show the name of the end region (e.g. SNP or gene). Clicking at one of the hoverable regions will show the details page for the interaction.