9d3c7912849101bf5e1323cffc28a951a542245f brianlee Wed May 15 15:13:13 2019 -0700 Updating interact example running by Kate diff --git src/hg/htdocs/goldenPath/help/interact.html src/hg/htdocs/goldenPath/help/interact.html index 3050d96..f823d91 100755 --- src/hg/htdocs/goldenPath/help/interact.html +++ src/hg/htdocs/goldenPath/help/interact.html @@ -138,31 +138,31 @@

In this example, you will create an interact custom track using example chromatin interaction data. This type of data is non-directional and commonly would represent a single experiment, with the interaction score being of interest. The settings below display using the gray-scale coloring feature, where the darkness of the interaction is based on the score.

  1. Paste the following track line into the custom track management page for the human assembly hg19.
    
     track type=interact name="interact Example Two" description="Chromatin interactions" useScore=on maxHeightPixels=50:100:200 visibility=full
     browser position chr3:64,562,440-64,642,288
     chr3    64496901        64584378        .       375     3       .       0       chr3    64496901        64498901        .       .       chr3    64581378        64584378        .       .
    -chr3    64568052        64569134        .       400     3       .       0       chr20   52552477        52556062        .       .       chr3    64098052        64101134        .       .
    +chr3    64568052        64569134        .       400     3       .       0       chr20   52552477        52556062        .       .       chr3    64568052        64569134        .       .
     chr3    64596901        64615378        .       175     3       .       0       chr3    64596901        64600855        .       .       chr3    64612677        64615378        .       .
     chr3    64623042        64636663        .       800     4       .       0       chr3    64623042        64625153        .       .       chr3    64632961        64636663        .       .
        
  2. Click the "submit" button.

After the file loads in the Genome Browser, you should see four interactions displayed on chromosome 3. Two of the interactions have both interacting regions in the browser view, and two have a single region. One of these interacts across chromosomes (with a region on chromosome 20), and the other with a region