9d3c7912849101bf5e1323cffc28a951a542245f brianlee Wed May 15 15:13:13 2019 -0700 Updating interact example running by Kate diff --git src/hg/htdocs/goldenPath/help/interact.html src/hg/htdocs/goldenPath/help/interact.html index 3050d96..f823d91 100755 --- src/hg/htdocs/goldenPath/help/interact.html +++ src/hg/htdocs/goldenPath/help/interact.html @@ -138,31 +138,31 @@ <p> In this example, you will create an interact custom track using example chromatin interaction data. This type of data is non-directional and commonly would represent a single experiment, with the interaction score being of interest. The settings below display using the gray-scale coloring feature, where the darkness of the interaction is based on the score. <ol> <li>Paste the following track line into the <a href="../../cgi-bin/hgCustom?db=hg19">custom track management page</a> for the human assembly hg19. <pre><code> track type=interact name="interact Example Two" description="Chromatin interactions" useScore=on maxHeightPixels=50:100:200 visibility=full browser position chr3:64,562,440-64,642,288 chr3 64496901 64584378 . 375 3 . 0 chr3 64496901 64498901 . . chr3 64581378 64584378 . . -chr3 64568052 64569134 . 400 3 . 0 chr20 52552477 52556062 . . chr3 64098052 64101134 . . +chr3 64568052 64569134 . 400 3 . 0 chr20 52552477 52556062 . . chr3 64568052 64569134 . . chr3 64596901 64615378 . 175 3 . 0 chr3 64596901 64600855 . . chr3 64612677 64615378 . . chr3 64623042 64636663 . 800 4 . 0 chr3 64623042 64625153 . . chr3 64632961 64636663 . . </code></pre></li> <li>Click the "submit" button.</li> </ol> </p> <ol> <img width="1080" height="148" src="../../images/interactExample2.png"> </ol> <p> After the file loads in the Genome Browser, you should see four interactions displayed on chromosome 3. Two of the interactions have both interacting regions in the browser view, and two have a single region. One of these interacts across chromosomes (with a region on chromosome 20), and the other with a region