c6ea6107d350d9b35f795e9de1b6c4169ae2e48d ccpowell Thu May 16 11:02:50 2019 -0700 adding felCat9 to newsarch and indexNews, refs #21043 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index d8c4f3c..4ac9b98 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,71 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> + +<a name="52019"></a> +<h2>Nov. 21. 2018 New Genome Browser: Cat, felCat9 (<em>Felis catus</em>)</h2> +<p> +A genome browser is now available for the <em>Felis catus</em> assembly released in November 2017 by the +<a href="https://www.genome.wustl.edu/" target="_blank">Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine</a> (Felis_catus_9.0). +<h3>About the assembly:</h3> +<ul> + <li><b>UCSC Genome Browser assembly ID:</b> felCat9</li> + <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.genome.wustl.edu/" target="_blank"> + Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine</a></li> + <li><b>Assembly date:</b> November 2017</li> + <li><b>Accession ID:</b>GCF_000181335.3</li> + <li><b>NCBI Genome information:</b><a href="https://www.ncbi.nlm.nih.gov/genome/78" +target="_blank" > 78</a> <em>(Felis catus)</em></li> + <li><b>NCBI Assembly information:</b><a href="https://www.ncbi.nlm.nih.gov/assembly/1448961" +target="_blank" > 1448961 </a></li> + <li><b>NCBI BioProject information:</b><a href="https://www.ncbi.nlm.nih.gov/bioproject/16726" +target="_blank" > 16726</a></li> + <li><b>NCBI BioSample information:</b><a href="https://www.ncbi.nlm.nih.gov/biosample/SAMN02953640" +target="_blank" > SAMN02953640</a></li> + <li><b>Contig+scaffold count:</b> 9434</li> + <li><b>Total size:</b> 2,521,863,845</li> + <li><a href="../goldenPath/credits.html#cat_credits" +target="_blank" >Acknowledgments</a></li> +</ul> +<h3>Data and Downloads:</h3> +<ul> + <li><a href="../goldenPath/credits.html#cat_use" +target="_blank" >Data use conditions and restrictions</a></li> + <li><a href="../goldenPath/help/ftp.html" +target="_blank" >Rsync</a> and +<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat9/" +target="_blank" >FTP</a></li> + <li><a href="http://hgdownload.soe.ucsc.edu/downloads.html#cat" +target="_blank" >Downloads page</a></li> +</ul> +</p> + + + <a name="041019"></a> <h2>Apr. 10, 2019 GENCODE Genes VM20 track released for mouse (GRCm38/mm10)</h2> <p> We are pleased to announce the release of the GENCODE Genes VM20 track for the Mouse assembly (<a href="../cgi-bin/hgTracks?db=mm10&position=chr12%3A56694976-56714605&hideTracks=1&knownGene=full&ignoreCookie=1" target="_blank">GRCm38/mm10</a>). In this GENCODE Genes update, we have made the ENSMUST* IDs the default IDs and have added the GENCODE pseudogenes to the knownGene tables. </p> <p> More details about the GENCODE Genes VM20 track can be found on the <a href="../cgi-bin/hgTrackUi?db=mm10&g=knownGene" target="_blank">GENCODE Genes track description page</a>.</p> <p> We would like to thank the <a href="https://www.gencodegenes.org/" target="_blank">GENCODE