Commits for chmalee

v382_preview2 to v382_base (2019-05-13 to 2019-05-20) v382

fde90be0141f2a9f4ecbe31f394f05b10d2f03f3 Tue May 14 09:12:20 2019 -0700

• Moving the parents and children hub check into the hubCheck program, refs #13428
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 26, context: html, text, full: html, text

f50aa23023cbc478df90deaded10321b75349e8b Tue May 14 15:35:06 2019 -0700

• Fixup python client before adding to userapps, refs #18869
  • src/hg/hubApi/tests/pythonClient.py - lines changed 70, context: html, text, full: html, text

692b26d94a66f8c655dc65a2d4e697dcd500e5e8 Tue May 14 15:48:44 2019 -0700

• Adding python client to userapps, refs #18869
  • src/hg/hubApi/tests/pythonClient.py - lines changed 147, context: html, text, full: html, text
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/ucscApiClient - lines changed 147, context: html, text, full: html, text

88f34170f2ed2d1e755d3f617b17e34b0df5eda6 Wed May 15 11:12:11 2019 -0700

• Making python api client handle pipes a bit more gracefully
  • src/utils/ucscApiClient - lines changed 29, context: html, text, full: html, text

447f4cc79938d078c168f9f7e65e7b1469681c7d Fri May 17 14:40:18 2019 -0700

• bamToPsl skips reads with the '*' cigar string, refs #23506
  • src/utils/bamToPsl/bamToPsl.c - lines changed 3, context: html, text, full: html, text