61769930f20061774aa09945aaaaf548ca349cd2 galt Sat May 18 00:47:44 2019 -0700 Changing CIRM SSI to use new setRoot approach diff --git src/hg/cirm/gateway/htdocs/projects.html src/hg/cirm/gateway/htdocs/projects.html index 1604d07..c5ca110 100755 --- src/hg/cirm/gateway/htdocs/projects.html +++ src/hg/cirm/gateway/htdocs/projects.html @@ -1,20 +1,21 @@ <!DOCTYPE html> <!--#set var="TITLE" value="CIRM Stem Cell Hub Projects" --> -<!--#set var="ROOT" value="" --> -<!--#include virtual="$ROOT/inc/header.html" --> +<!--#include virtual="setRoot.html" --> + +<!--#include virtual="${ROOT}inc/header.html" --> <div class="cirm-page-body"> <div class="cirm-page-title back-light-blue" style="//background: #1E90FF;"> <h5 class="cirm-page-title-text">Projects initiated and funded by the CESCG</h5> </div> <div class="row" style="background:#fff; border:1px solid #ed217c; padding: 10px; margin: 10px 0; position: relative"> <div class="col-12"> <div class="row"> <p class="lead text-dark-blue">Legend:</p> </div> <div class="row"> <div class="col-4"> <i class="fas fa-braille fa-lg text-dark-blue" aria-hidden="true"></i> - Plate-based sequencing (e.g. SMART-seq2) @@ -446,56 +447,56 @@ <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"> <a href="https://kriegsteinlab.ucsf.edu/" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Arnold Kriegstein, UCSF" data-content="The Kriegstein lab is using single-cell RNA profiling to learn about the diverse population of cortical neurons.">Kriegstein</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i> </td> <td class="datasetid"> - <a href="/d/kriegsteinBrainOrganoids1">kriegsteinBrainOrganoids1</a> + <a href="<!--#echo var='ROOT'-->d/kriegsteinBrainOrganoids1">kriegsteinBrainOrganoids1</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="Single-cell Brain Organoids" data-content="874 iPSC-derived brain organoid samples processed via single-cell RNA-seq."></i> <br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/30735633" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Pollen AA et al. 2019. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- GEO Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124299" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: 2em;'> View GSE124299" data-content="Click database icon to view on GEO."> <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegsteinBrainOrganoids1%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegsteinBrainOrganoids1%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> @@ -551,56 +552,56 @@ <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> <td class="datasetid"> - <a href="/d/kriegsteinRadialGliaStudy1" >kriegsteinRadialGliaStudy1</a> + <a href="<!--#echo var='ROOT'-->d/kriegsteinRadialGliaStudy1" >kriegsteinRadialGliaStudy1</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Single-cell Study of Brain Development" data-content="376 primary samples of fetal radial glial cells that were processed via single-cell RNA-seq."></i> <br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/26406371" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Pollen AA et al. 2015. Molecular identity of human outer radial glia during cortical development. Cell." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- dbGap Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000989" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/projects/gap/images/dbGaP_logo_final.jpg' style='height: 2em;'> View phs000989" data-content="Click database icon to view on dbGaP"> <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegsteinRadialGliaStudy1%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegsteinRadialGliaStudy1%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> @@ -608,55 +609,55 @@ <td class="text-light-green text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> <td class="datasetid"> - <a href="/d/kriegstein6k">kriegstein6k</a> + <a href="<!--#echo var='ROOT'-->d/kriegstein6k">kriegstein6k</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="RNA-seq from 6,000 primary cells at UCSF."></i> <br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/29217575" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Nowakowski TJ et al. 2017. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- dbGaP Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000989" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/projects/gap/images/dbGaP_logo_final.jpg' style='height: 2em;'> View phs000989" data-content="Click database icon to view on dbGaP"> <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegstein6k%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27kriegstein6k%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> @@ -707,109 +708,109 @@ <td></td> <!-- <a href="#" title="Dismissible popover" data-toggle="popover" data-trigger="focus" data-content="C">Click me</a> --> <td class="lab text-nowrap"> <a href="https://quakelab.stanford.edu/" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Stephen Quake, Stanford University" data-content="The Quake lab is working on characterizing cell subpopulations of healthy and pathological tissues of the brain and pancreas. He is also looking at gene and epigenetic properties of organ lineages to compare stem cell differentiation hierarchy to normal tissues to elucidate mechanisms of pathogenesis.">Quake</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i> </td> <td class="datasetid"> - <a href="/d/quakeBrainGeo1">quakeBrainGeo1</a> + <a href="<!--#echo var='ROOT'-->d/quakeBrainGeo1">quakeBrainGeo1</a> <i class="fas fa-info-circle" aria-hidden="true" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Examination of cell types in healthy human brain samples."></i><br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/26060301" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Darmanis S et al. 2015. A survey of human brain transcriptome diversity at the single cell level. PNAS." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- GEO Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE67835" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: 2em;'> View GSE67835" data-content="Click database icon to view on GEO."> <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeBrainGeo1%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeBrainGeo1%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square text-light-blue" aria-hidden="true"></i> </td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> <td class="datasetid"> - <a href="/d/quakeGlioblastomaGeo1">quakeGlioblastomaGeo1</a> + <a href="<!--#echo var='ROOT'-->d/quakeGlioblastomaGeo1">quakeGlioblastomaGeo1</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="Characterizing the effects of glioblastoma on normal brain."></i><br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/29091775/" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Darmanis, S., et al. (2017). Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma. Cell Rep." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- GEO Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84465" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: 2em;'> View GSE84465" data-content="Click database icon to view on GEO."> - <i class="fas fa-database" aria-hidden="true"></i> + <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeGlioblastomaGeo1%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeGlioblastomaGeo1%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> @@ -1198,39 +1199,39 @@ </tr> <tr> <td></td> <td class="lab text-nowrap"> <a href="https://cornlab.com/" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Jacob Corn, UC Berkeley" data-content="The Corn lab is investigating fixing sickle cell anemia with CRISPR. Aim 1 of the Corn lab is to use RNA-seq to explore erythroid (red blood cell) maturation. Aim 2 is using boutique DNA-seq methods to investigate effets of using CRISPR.">Corn</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i> </td> <td class="datasetid"> - <a href="/d/cornErythroidMaturation">cornErythroidMaturation</a> + <a href="<!--#echo var='ROOT'-->d/cornErythroidMaturation">cornErythroidMaturation</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="Investigating erythoid maturation with RNA-seq."></i> <br> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27cornErythroidMaturation%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27cornErythroidMaturation%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> @@ -1238,40 +1239,40 @@ <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> <td class="datasetid"> - <a href="/d/cornOffTarget">cornOffTarget</a> + <a href="<!--#echo var='ROOT'-->d/cornOffTarget">cornOffTarget</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="Investigating CRISPR off-target cleavage sites using GUIDE-seq, Amplicon-seq and Capture-seq."></i> <br> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27cornOffTarget%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27cornOffTarget%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> @@ -1549,56 +1550,56 @@ <tr> <td></td> <td class="lab text-nowrap"> <a href="https://quakelab.stanford.edu/" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Stephen Quake, Stanford University" data-content="The Quake lab is working on characterizing cell subpopulations of healthy and pathological tissues of the brain and pancreas. They are also looking at gene and epigenetic properties of organ lineages to compare stem cell differentiation hierarchy to normal tissues to elucidate mechanisms of pathogenesis.">Quake</a> <i class="fas fa-external-link-alt icon-sm" aria-hidden="true"></i> </td> <td class="datasetid"> - <a href="/d/quakePancreas1">quakePancreas1</a> + <a href="<!--#echo var='ROOT'-->d/quakePancreas1">quakePancreas1</a> <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns."></i> <br> <!-- PubMed Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/pubmed/28965763" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Enge M et al. 2017. Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Pattern. Cell." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- GEO Icon/Link --> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81547" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="<img src='https://www.ncbi.nlm.nih.gov/geo/img/geo_main.gif' style='height: 2em;'> View GSE81547" data-content="Click database icon to view on GEO."> <i class="fas fa-database" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakePancreas1%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakePancreas1%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"> <i class="fas fa-braille fa-lg" aria-hidden="true"></i> </td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"> <i class="fas fa-square" aria-hidden="true"></i> </td> @@ -1607,52 +1608,53 @@ <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> <tr> <td></td> <td class="lab text-nowrap"></td> <!-- <td class="datasetid"> - <a href="/d/quakeFetalPancreasSpatial">quakeFetalPancreasSpatial</a>--> + FYI the following SSI command comment was disabled to avoid nesting comments. replace ~~ with dash dash to restore it + <a href="<!~~ #echo var='ROOT'~~>d/quakeFetalPancreasSpatial">quakeFetalPancreasSpatial</a>--> <td class="datasetid"> quakeFetalPancreasSpatial <i class="fas fa-info-circle popoveradjust" aria-hidden="true" data-toggle="popover" data-trigger="hover" data-placement="top" data-container="body" data-html="true" title="" data-content="Analysis of the spatial distribution of single mRNA molecules measured by in situ sequencing on human fetal pancreas at three developmental time points–80, 87 and 117 days post-fertilization"></i> <br> <!-- PubMed Icon/Link --> <a href="https://www.nature.com/articles/s41598-019-41951-2" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="Riu L et al. 2019. Modeling Spatial Correlation of Transcripts with Application to Developing Pancreas. Nat Sci Rep." data-content="View publication from this dataset"> <i class="fas fa-file-alt" aria-hidden="true"></i></a> <!-- SCHub Icon/Link --> - <a href="../cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeFetalPancreasSpatial%27%20" + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?browseFiles_facet_op=resetAll&browseFiles_facet_fieldName=&browseFiles_facet_fieldVal=&cdwCommand=browseFiles&cdwFile_filter=data_set_id%3D%27quakeFetalPancreasSpatial%27%20" target="_blank" data-toggle="popover" data-trigger="hover" class="popoveradjust" data-placement="top" data-container="body" data-html="true" title="" data-content="Download from the Stem Cell Hub"> <i class="fas fa-file-download" aria-hidden="true"></i></a> </td> <td class="text-dark-blue text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-dark-pink text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-blue text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> @@ -1703,16 +1705,16 @@ <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-light-green text-center"></td> <td class="text-orange text-center"></td> <td class="text-dark-blue text-center"></td> </tr> </tbody> </table> </div> </div> -<!--#include virtual="$ROOT/inc/footer.html" --> +<!--#include virtual="${ROOT}inc/footer.html" -->