79fb0cba806fd429dbd35caf21944d3e3b24a3d2 hiram Thu May 16 11:28:45 2019 -0700 note about index on Frames table no redmine diff --git src/hg/makeDb/doc/dm6/multiz124way.txt src/hg/makeDb/doc/dm6/multiz124way.txt index 5e8e6a6..e65f63b 100644 --- src/hg/makeDb/doc/dm6/multiz124way.txt +++ src/hg/makeDb/doc/dm6/multiz124way.txt @@ -2227,30 +2227,33 @@ # 83559 droSec1 # RBest: # 55003 dm6 # 175910 droAna3 # 114498 droEre2 # 198449 droPer1 # 89753 droSec1 # load the resulting file ssh hgwdev cd /hive/data/genomes/dm6/bed/multiz124way/frames time hgLoadMafFrames dm6 multiz124wayFrames multiz124wayFrames.bed.gz # real 0m17.036s + # this table needs a better index for performanc: + hgsql dm6 -e 'CREATE INDEX src on multiz124wayFrames (src, bin);' + hgsql -e 'select count(*) from multiz124wayFrames;' dm6 # +----------+ # | count(*) | # +----------+ # | 3003403 | # +----------+ time featureBits -countGaps dm6 multiz124wayFrames # 27774049 bases of 143726002 (19.324%) in intersection # real 0m14.701s # enable the trackDb entries: # frames multiz124wayFrames