50a03ec4455df9e10b785500b2de984c3452a966
hiram
  Thu May 16 11:29:39 2019 -0700
add chainNet for GRCm38B experiment no redmine

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.ra src/hg/makeDb/trackDb/trackDb.chainNet.ra
index 366306d..f481f68 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra
@@ -2394,30 +2394,81 @@
 
     track chainNetSorAra1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetSorAra1
 
         track netSorAra1
         parent chainNetSorAra1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign sorAra1 chainSorAra1
         html chainNet
 
+track chainNetGRCm38B
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 370.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb GRCm38B
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainNetGRCm38BViewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetGRCm38B
+    spectrum on
+
+        track chainGRCm38B
+        parent chainNetGRCm38BViewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain GRCm38B
+        html chainNet
+
+    track chainNetGRCm38BViewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetGRCm38B
+
+        track netGRCm38B
+        parent chainNetGRCm38BViewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign GRCm38B chainGRCm38B
+        html chainNet
+
 track chainNetMm10
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 370.3
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91