c1072a276744b6c58f7f88b997c17eb6da489616 max Wed May 15 07:38:12 2019 -0700 another update to the clinvar docs page, no redmine diff --git src/hg/makeDb/trackDb/human/clinvar.html src/hg/makeDb/trackDb/human/clinvar.html index 74938c5..6e32713 100644 --- src/hg/makeDb/trackDb/human/clinvar.html +++ src/hg/makeDb/trackDb/human/clinvar.html @@ -52,31 +52,32 @@ <p> Entries in the ClinVar short variants track are shaded by clinical annotation: <b><font color="red">red for pathogenic</font></b>, <B><font color="#888">dark grey for uncertain significance or not provided</font></b> and <B><font color="green">green for benign</font></b>. </p> <p> The score of the variants is the number of "stars" in ClinVar. On the track configuration page (above), you can filter the track to show only variants with more than a certain number of stars. For more information on the star rating, see the <a href="https://www.ncbi.nlm.nih.gov/clinvar/docs/review_status/" target="_blank">ClinVar documentation</a>. </p> <h2>Data updates</h2> <p>ClinVar publishes a new release once per month and this track is updated automatically 5-6 days -later. You can find the previous versions of the track organized by month on our +later. The date of the last update is shown when you click onto any variant. +You can find the previous versions of the track organized by month on our downloads server in the <a href="http://hgdownload.soe.ucsc.edu/goldenPath/hg19/archive/clinvar/" target="_blank">archive</a> directory. To access one of these previous versions, paste the URL to one of the older files into our "Custom tracks" box.</p> <H2>Data access</H2> <p> The raw data can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> or the <a href="../cgi-bin/hgIntegrator">Data Integrator</a>. <p> For automated download and analysis, the genome annotation is stored in a bigBed file that can be downloaded from <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/bbi/" target="_blank">our download server</a>. The files for this track are called <tt>clinVarMain.bb</tt> and <tt>clinVarCnv.bb</tt>. Individual