Commits for angie
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v381_base to v382_preview (2019-04-29 to 2019-05-06) v382
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a8c88d64b3a8adf8d6b522247b89c327b36e2a66 Mon Apr 29 10:41:21 2019 -0700
- Don't create new userdata directory unless we have at least one file to store there. Thx Hiram
- src/hg/hgSession/sessionData.c - lines changed 7, context: html, text, full: html, text
9d47270703d4b9b603127f6c41dc9f1e49b56708 Wed Apr 17 11:08:58 2019 -0700
- loadAndValidateBed: Don't errAbort on empty array when checking autoSql fields; empty arrays are valid.
4d1e38588ee18350611bbe576a7ceb91d5812e65 Tue Apr 16 14:01:29 2019 -0700
- Added const to declarations of some char * function params that are not modified, so I can use const in calling routines.
bc5a73ec376d9d06861b8d07e7abfe615fc38501 Wed Apr 10 09:39:10 2019 -0700
- Added hashIntReset, to quickly remove & reset to 0 all integer values of a hash. [It can also NULL out hashEl pointers, but mem alloc issues should be considered]
506484c03bae4b9a7d61c5a56b928e773a0c83a7 Tue Apr 16 14:02:22 2019 -0700
- Added hashNewLm/newHashLm so an external lm can be passed in and used for all hash allocations.
92ff3a19fc5cacf7b92a1a25086d9300f7df53e0 Tue Apr 16 14:02:52 2019 -0700
- Added *Lm functions that optionally use lm to allocate memory.
Removed unused jsonFindName* functions -- if needed in the future,
jsonQuery will probably be easier to use.
b3d2a3a1d7e096b0f97a2a5295d4fa610336de04 Fri Oct 12 11:02:37 2018 -0700
- Adding jsonQuery, which extracts values from a jsonElement tree using a simple path notation e.g. "journals[publisher=Nature].articles[*].author[0].lastName".
aside: slFreeList doesn't check for NULL. I think it should, but it's used in a zillion places so for now I'll just check before calling.
- src/hg/utils/jsonQuery/jsonQuery.c - lines changed 103, context: html, text, full: html, text
- src/hg/utils/jsonQuery/makefile - lines changed 3, context: html, text, full: html, text
- src/lib/tests/expected/jsonQueryTest.out - lines changed 190, context: html, text, full: html, text
- src/lib/tests/input/jsonQueryTestJson.txt - lines changed 5, context: html, text, full: html, text
- src/lib/tests/input/jsonQueryTestPath.txt - lines changed 18, context: html, text, full: html, text
- src/lib/tests/jsonQueryTest.c - lines changed 169, context: html, text, full: html, text
- src/lib/tests/makefile - lines changed 11, context: html, text, full: html, text
9a5c1dc41298119f9569b12985a34146212dfe1a Wed Apr 10 09:36:38 2019 -0700
- Added soTermStringIdToId, soTermCmp, and soTermToMisoLink, for use with new dbSNP data. refs #23283
0c882cb50cc196e069a5df0f19cb83997d6d3882 Tue Apr 16 14:00:17 2019 -0700
- Added SO terms used in dbSNP b152 JSON, plus an soUnknown enum value for when no SO terms are assigned.
Move up nc_transcript_variant in funcImpactOrder to be above up/downstream. refs #23283
7c84fe77d95b0733fcd4b27d8cbdfc038c1a8d5c Wed May 1 09:47:25 2019 -0700
- lmCleanup: null out *pLm before freeing lm, to make valgrind --leak-check=full -v happy.
9f568df48c409c062eab6e3b2aa60bc8509bf120 Fri May 3 16:42:33 2019 -0700
- binFromRange: util to convert start and end coords into a SQL '(bin = ### or bin = ### ...)' condition. refs #23429
- src/hg/utils/binFromRange/binFromRange.c - lines changed 33, context: html, text, full: html, text
- src/hg/utils/binFromRange/makefile - lines changed 3, context: html, text, full: html, text
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