1b5d4cf1c155cb8afbbf5f635e16c8b396be5de6 hiram Thu May 2 14:31:02 2019 -0700 fixing err35 and err36 outputs refs #18869 diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile index 50470b6..7a3e278 100644 --- src/hg/hubApi/tests/makefile +++ src/hg/hubApi/tests/makefile @@ -466,37 +466,37 @@ # testing extraneous parameters on functions err33: setOutput @printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/list/tracks?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=_araTha1;trackLeavesOnly=1;chrom=chr1'\n" @./jsonConsumer.pl -endpoint="/list/tracks" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing extraneous parameters on functions err34: setOutput @printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/list/chromosomes?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=_araTha1;trackLeavesOnly=1;chrom=chr1'\n" @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing extraneous parameters on functions err35: setOutput @printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/sequence?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=_araTha1;trackLeavesOnly=1;chrom=chr1;start=4567;end=8901;trackLeavesOnly'\n" - @./jsonConsumer.pl -endpoint="/getData/sequence" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz + @./jsonConsumer.pl -endpoint="/getData/sequence" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing extraneous parameters on functions err36: setOutput @printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=_araTha1;trackLeavesOnly=1;chrom=chr1;start=4567;end=8901;trackLeavesOnly;track=assembly_;maxItemsOutput=5;jsonOutputArrays=1;trackLeavesOnly=1'\n" - @./jsonConsumer.pl -endpoint="/getData/track" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly -track=assembly_ -maxItemsOutput=5 -jsonOutputArrays -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz + @./jsonConsumer.pl -endpoint="/getData/track" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=_araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly -track=assembly_ -maxItemsOutput=5 -jsonOutputArrays -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz ##################### wiggle data ########################################### # classic wiggle with wig table and wib file wig01: setOutput @printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?track=gc5Base;genome=ce4;maxItemsOutput=5'\n" @./jsonConsumer.pl -endpoint="/getData/track" -genome=ce4 -track=gc5Base -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # classic wiggle with wig table and wib file with chrom specified wig02: setOutput @printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?track=gc5Base;genome=ce4;chrom=chrIV;maxItemsOutput=5'\n" @./jsonConsumer.pl -endpoint="/getData/track" -genome=ce4 -track=gc5Base -chrom=chrIV -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz