84b4398cfba70b1faf3ecff87404f0884aef4be6 hiram Thu May 2 10:27:48 2019 -0700 correcting err21 test refs #18869 diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile index 81823ef..2b2fecd 100644 --- src/hg/hubApi/tests/makefile +++ src/hg/hubApi/tests/makefile @@ -1,22 +1,24 @@ test:: test0 test6 test7 test8 test9 test10 \ test11 test12 test13 test14 test15 test16 test19 test21 \ test26 test27 test28 test29 test39 test40 \ - listFunctions getFunctions getSequence wigData errorTests + listFunctions getFunctions getSequence wigData errorTests \ + notSupported -all:: listFunctions getFunctions getSequence wigData errorTests +all:: listFunctions getFunctions getSequence wigData errorTests \ + notSupported listFunctions: list01 list02 list03 list04 list05 list06 list07 list08 list09 \ list10 list11 list12 list13 list14 list15 getFunctions: test6 test7 test8 test9 test10 test11 test12 test13 test14 \ test15 test16 test19 test21 test26 test27 test28 \ test29 test39 test40 getSequence: getSeq01 getSeq02 getSeq03 wigData: wig01 wig02 wig03 wig04 wig05 wig06 wig07 wig08 wig09 wig10 \ wig11 wig12 wig13 wig14 wig15 wig16 wig17 wig18 wig19 wig20 \ wig21 wig22 wig23 wig24 errorTests: err01 err02 err03 err04 err05 err06 err07 err08 err09 err10 \ @@ -378,32 +380,32 @@ err19: setOutput @printf "### $@ https://hgwdev-api.gi.ucsc.edu/list/chromosomes?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha\n" @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome=araTha 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing /list/chromosomes? hubUrl can not # find specified track for genome=_braRap1 track=_assembly (wrong name) err20: setOutput @printf "### $@ https://hgwdev-api.gi.ucsc.edu/list/chromosomes?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/bPlants/hub.txt;genome=_braRap1;track=_assembly\n" @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/bPlants/hub.txt" -genome=_braRap1 -track=_assembly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing /list/chromosomes? hubUrl can not # find specified database in track hub err21: setOutput - @printf "### $@ http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt?genome=hg19\n" - @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt" -genome=hg19 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz + @printf "### $@ 'https://apibeta.soe.ucsc.edu/list/chromosomes?genome=hg18;hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt'\n" + @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt" -genome=hg18 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing /list/chromosomes? bad hubUrl err22: setOutput @printf "### $@ http://genome-test.gi.ucsc.edu/~hiram/hubs/xGillBejerano/hub.txt\n" @./jsonConsumer.pl -endpoint="/list/chromosomes" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/xGillBejerano/hub.txt" 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing /list/chromosomes? genome=ce11 track=gbLoaded - not a position track err23: setOutput @printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/list/chromosomes?genome=ce11;track=gbLoaded'\n" @./jsonConsumer.pl -endpoint="/list/chromosomes" -genome=ce11 -track=gbLoaded 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;' | gzip -c > testOutput/$@.gz @zdiff expected/$@.gz testOutput/$@.gz # testing /list/hubGenomes extraneous genome=araTha1 causes error