b066b38ccaff9d15f82a8888ecec6c7267a8c067 jnavarr5 Fri May 3 14:45:27 2019 -0700 Using definition lists instead of tags, refs #20551 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index d0d38bc..1bbf031 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1216,56 +1216,58 @@ conversion file is not listed, send a request to the genome mailing list and we may be able to generate one for you.
Most of the underlying tables containing the genomic sequence and annotation data displayed in the Genome Browser can be downloaded. All of the tables are freely usable for any purpose except as indicated in the README.txt file in the download directories. This data was contributed by many researchers, as listed on the Genome Browser Credits page. Please acknowledge the contributor(s) of the data you use.
Genome data can be downloaded in different ways:
--
rsync -a -P rsync://hgdownload.soe.ucsc.edu/path/file ./
can quickly and efficiently
download large files to your current directory (./). To download an entire directory (note the
trailing slash), you would use an expression such as
rsync -a -P rsync://hgdownload.soe.ucsc.edu/directory/ ./
For more information please
- click here.ftp://hgdownload.soe.ucsc.edu/goldenPath/
will take you to a directory that contains
the genome download directories. This download method is not recommended if you plan to download
a large file or multiple files from a single directory compared to rsync (see above). You can,
however, use the mget command to download multiple files: mget filename1
- filename2, or mget -a (to download all the files in the directory).There may be several download directories associated with each version of a genome assembly: the full data set (bigZips), the full data set by chromosome (chromosome), the annotation database tables (database), and one or more sets of comparative cross-species alignments.
BigZips contains the entire draft of the genome in chromosome and/or contig form. Depending on the genome, this directory may contain some or all of the following files: