bb56ceb3db06320c7bf4ba6e5f1e14b88b51afac
max
Thu May 2 01:43:25 2019 -0700
adding link to BLAT faq to blat all output, refs #23441
diff --git src/hg/hgBlat/hgBlat.c src/hg/hgBlat/hgBlat.c
index 4f40209..bdc91b3 100644
--- src/hg/hgBlat/hgBlat.c
+++ src/hg/hgBlat/hgBlat.c
@@ -1925,31 +1925,32 @@
slSort(&pfdDone, rcPairsCmp);
hideWeakerOfQueryRcPairs(pfdDone);
}
// requires db for chromSize, do database after multi-threading done.
changeMaxGenePositionToPositiveStrandCoords(pfdDone);
// sort by maximum hits
slSort(&pfdDone, genomeHitsCmp);
// Print instructions
printf("The approximate results below are sorted by number of matching 'tiles', "
"perfectly matching sub-sequences of length 11 (DNA) "
"or 4 (protein).
");
printf("Click the 'assembly' link to trigger a full BLAT alignment for that genome. \n");
- printf("If its alignment score is < 20 bp, no match will be found.
\n");
+ printf("If its alignment score is < 20 bp, no match will be found.
\n");
+ printf("For more details see the BLAT FAQ.
\n");
// Print report // TODO move to final report at the end of ALL Assemblies
int lastSeqNumber = -1;
int idCount = 0;
char id[256];
struct genomeHits *gH = NULL;
for (gH = pfdDone; gH; gH = gH->next)
{
if (lastSeqNumber != gH->seqNumber)
{
if (lastSeqNumber != -1) // end previous table
{
printf("
\n");
}
lastSeqNumber = gH->seqNumber;