bb56ceb3db06320c7bf4ba6e5f1e14b88b51afac max Thu May 2 01:43:25 2019 -0700 adding link to BLAT faq to blat all output, refs #23441 diff --git src/hg/hgBlat/hgBlat.c src/hg/hgBlat/hgBlat.c index 4f40209..bdc91b3 100644 --- src/hg/hgBlat/hgBlat.c +++ src/hg/hgBlat/hgBlat.c @@ -1925,31 +1925,32 @@ slSort(&pfdDone, rcPairsCmp); hideWeakerOfQueryRcPairs(pfdDone); } // requires db for chromSize, do database after multi-threading done. changeMaxGenePositionToPositiveStrandCoords(pfdDone); // sort by maximum hits slSort(&pfdDone, genomeHitsCmp); // Print instructions printf("The approximate results below are sorted by number of matching 'tiles', " "perfectly matching sub-sequences of length 11 (DNA) " "or 4 (protein). <br>"); printf("Click the 'assembly' link to trigger a full BLAT alignment for that genome. \n"); - printf("If its alignment score is < 20 bp, no match will be found.<br>\n"); + printf("If its alignment score is < 20 bp, no match will be found.<br>\n"); + printf("For more details see the <a href='/FAQ/FAQblat.html#blat9'>BLAT FAQ</a>.<br>\n"); // Print report // TODO move to final report at the end of ALL Assemblies int lastSeqNumber = -1; int idCount = 0; char id[256]; struct genomeHits *gH = NULL; for (gH = pfdDone; gH; gH = gH->next) { if (lastSeqNumber != gH->seqNumber) { if (lastSeqNumber != -1) // end previous table { printf("</TABLE><br><br>\n"); } lastSeqNumber = gH->seqNumber;