a7862d4f9328120aafe39604f07aa39b293e76bd galt Thu May 9 15:29:17 2019 -0700 Brian requested single paragraph diff --git src/hg/hgBlat/hgBlat.c src/hg/hgBlat/hgBlat.c index 2e83601..3589e6a 100644 --- src/hg/hgBlat/hgBlat.c +++ src/hg/hgBlat/hgBlat.c @@ -1921,36 +1921,36 @@ // Combine pairs with a query and its RC. if (!(debuggingGfResults) && (sameString(pfdDone->xType,"dna") || sameString(pfdDone->xType,"dnax"))) { slSort(&pfdDone, rcPairsCmp); hideWeakerOfQueryRcPairs(pfdDone); } // requires db for chromSize, do database after multi-threading done. changeMaxGenePositionToPositiveStrandCoords(pfdDone); // sort by maximum hits slSort(&pfdDone, genomeHitsCmp); // Print instructions - printf("The single best alignment found for each assembly is shown below.<br>\n" + printf("The single best alignment found for each assembly is shown below.\n" "The approximate results below are sorted by number of matching 'tiles', " "perfectly matching sub-sequences of length 11 (DNA) " - "or 4 (protein). Using only tile hits, this speedy method can not see mismatches.<br>"); + "or 4 (protein). Using only tile hits, this speedy method can not see mismatches."); printf("Click the 'assembly' link to trigger a full BLAT alignment for that genome. \n"); - printf("The entire alignment, including mismatches and gaps, must score 20 or higher in order to appear in the Blat output.<br>\n"); + printf("The entire alignment, including mismatches and gaps, must score 20 or higher in order to appear in the Blat output.\n"); printf("For more details see the <a href='/FAQ/FAQblat.html#blat9'>BLAT FAQ</a>.<br>\n"); // Print report // TODO move to final report at the end of ALL Assemblies int lastSeqNumber = -1; int idCount = 0; char id[256]; struct genomeHits *gH = NULL; for (gH = pfdDone; gH; gH = gH->next) { if (lastSeqNumber != gH->seqNumber) { if (lastSeqNumber != -1) // end previous table { printf("</TABLE><br><br>\n"); }