5157fdf6389da69cc64f5c0f222f9f6bc8358fec hiram Fri May 10 14:23:21 2019 -0700 better to centralize listing of legal arguments in one location refs #23437 #18869 diff --git src/hg/hubApi/list.c src/hg/hubApi/list.c index e6e93ab..d97eb84 100644 --- src/hg/hubApi/list.c +++ src/hg/hubApi/list.c @@ -12,31 +12,31 @@ int i = 0; jsonWriteObjectStart(jw, NULL); jsonWriteString(jw, columnNames[i++], el->hubUrl); jsonWriteString(jw, columnNames[i++], el->shortLabel); jsonWriteString(jw, columnNames[i++], el->longLabel); jsonWriteString(jw, columnNames[i++], el->registrationTime); jsonWriteNumber(jw, columnNames[i++], (long long)el->dbCount); jsonWriteString(jw, columnNames[i++], el->dbList); jsonWriteString(jw, columnNames[i++], el->descriptionUrl); jsonWriteObjectEnd(jw); } static void jsonPublicHubs() /* output the hubPublic SQL table */ { -char *extraArgs = verifyLegalArgs(NULL); /* no extras allowed */ +char *extraArgs = verifyLegalArgs(argsListPublicHubs); /* no extras allowed */ if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /list/publicHubs '%s'", extraArgs); struct sqlConnection *conn = hConnectCentral(); char *dataTime = sqlTableUpdate(conn, hubPublicTableName()); time_t dataTimeStamp = sqlDateToUnixTime(dataTime); replaceChar(dataTime, ' ', 'T'); /* ISO 8601 */ struct hubPublic *el = hubPublicDbLoadAll(); struct jsonWrite *jw = apiStartOutput(); jsonWriteString(jw, "dataTime", dataTime); jsonWriteNumber(jw, "dataTimeStamp", (long long)dataTimeStamp); freeMem(dataTime); // redundant: jsonWriteString(jw, "tableName", hubPublicTableName()); char **columnNames = NULL; char **columnTypes = NULL; @@ -71,31 +71,31 @@ jsonWriteNumber(jw, columnNames[i++], (long long)el->active); jsonWriteNumber(jw, columnNames[i++], (long long)el->orderKey); jsonWriteString(jw, columnNames[i++], el->genome); jsonWriteString(jw, columnNames[i++], el->scientificName); jsonWriteString(jw, columnNames[i++], el->htmlPath); jsonWriteNumber(jw, columnNames[i++], (long long)el->hgNearOk); jsonWriteNumber(jw, columnNames[i++], (long long)el->hgPbOk); jsonWriteString(jw, columnNames[i++], el->sourceName); jsonWriteNumber(jw, columnNames[i++], (long long)el->taxId); jsonWriteObjectEnd(jw); } static void jsonDbDb() /* output the dbDb SQL table */ { -char *extraArgs = verifyLegalArgs(NULL); /* no extras allowed */ +char *extraArgs = verifyLegalArgs(argsListUcscGenomes); /* no extras allowed */ if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /list/ucscGenomes '%s'", extraArgs); struct sqlConnection *conn = hConnectCentral(); char *dataTime = sqlTableUpdate(conn, "dbDb"); time_t dataTimeStamp = sqlDateToUnixTime(dataTime); replaceChar(dataTime, ' ', 'T'); /* ISO 8601 */ struct dbDb *dbList = ucscDbDb(); struct dbDb *el; struct jsonWrite *jw = apiStartOutput(); jsonWriteString(jw, "dataTime", dataTime); jsonWriteNumber(jw, "dataTimeStamp", (long long)dataTimeStamp); freeMem(dataTime); char **columnNames = NULL; char **columnTypes = NULL; @@ -407,31 +407,31 @@ { recursiveTrackList(jw, el); } apiFinishOutput(0, NULL, jw); } /* static void trackDbJsonOutput(char *db, FILE *f) */ void apiList(char *words[MAX_PATH_INFO]) /* 'list' function words[1] is the subCommand */ { if (sameWord("publicHubs", words[1])) jsonPublicHubs(); else if (sameWord("ucscGenomes", words[1])) jsonDbDb(); else if (sameWord("hubGenomes", words[1])) { - char *extraArgs = verifyLegalArgs("hubUrl"); /* only one arg allowed */ + char *extraArgs = verifyLegalArgs(argsListHubGenomes); /* only one allowed */ if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /list/hubGenomes '%s'", extraArgs); char *hubUrl = cgiOptionalString("hubUrl"); if (isEmpty(hubUrl)) apiErrAbort(err400, err400Msg, "must supply hubUrl='http:...' some URL to a hub for /list/hubGenomes"); struct trackHub *hub = errCatchTrackHubOpen(hubUrl); if (hub->genomeList) { slNameSort((struct slName **)&hub->genomeList); struct jsonWrite *jw = apiStartOutput(); jsonWriteString(jw, "hubUrl", hubUrl); jsonWriteObjectStart(jw, "genomes"); struct trackHubGenome *el; @@ -441,31 +441,31 @@ jsonWriteString(jw, "organism", el->organism); jsonWriteString(jw, "description", el->description); jsonWriteString(jw, "trackDbFile", el->trackDbFile); jsonWriteString(jw, "twoBitPath", el->twoBitPath); jsonWriteString(jw, "groups", el->groups); jsonWriteString(jw, "defaultPos", el->defaultPos); jsonWriteNumber(jw, "orderKey", el->orderKey); jsonWriteObjectEnd(jw); } jsonWriteObjectEnd(jw); apiFinishOutput(0, NULL, jw); } } else if (sameWord("tracks", words[1])) { - char *extraArgs = verifyLegalArgs("genome;hubUrl;trackLeavesOnly"); + char *extraArgs = verifyLegalArgs(argsListTracks); if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /list/tracks '%s'", extraArgs); char *hubUrl = cgiOptionalString("hubUrl"); char *genome = cgiOptionalString("genome"); char *db = cgiOptionalString("genome"); if (isEmpty(hubUrl) && isNotEmpty(db)) { struct sqlConnection *conn = hAllocConnMaybe(db); if (NULL == conn) apiErrAbort(err400, err400Msg, "can not find 'genome=%s' for endpoint '/list/tracks", db); else hFreeConn(&conn); } if (isEmpty(hubUrl) && isEmpty(db)) @@ -487,31 +487,31 @@ "/list/tracks", hubUrl); struct trackDb *tdbList = obtainTdb(hubGenome, NULL); struct jsonWrite *jw = apiStartOutput(); jsonWriteString(jw, "hubUrl", hubUrl); jsonWriteObjectStart(jw, hubGenome->name); struct trackDb *el = NULL; for (el = tdbList; el != NULL; el = el->next ) { recursiveTrackList(jw, el); } jsonWriteObjectEnd(jw); apiFinishOutput(0, NULL, jw); } else if (sameWord("chromosomes", words[1])) { - char *extraArgs = verifyLegalArgs("genome;hubUrl;track"); + char *extraArgs = verifyLegalArgs(argsListChromosomes); if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /list/chromosomes '%s'", extraArgs); char *hubUrl = cgiOptionalString("hubUrl"); char *genome = cgiOptionalString("genome"); char *db = cgiOptionalString("genome"); if (isEmpty(hubUrl) && isNotEmpty(db)) { struct sqlConnection *conn = hAllocConnMaybe(db); if (NULL == conn) apiErrAbort(err400, err400Msg, "can not find 'genome=%s' for endpoint '/list/chromosomes", db); else hFreeConn(&conn); } if (isEmpty(hubUrl) && isEmpty(db))