fe43cd3394528a515b867eb2e8f69d152bd4d178
jcasper
  Mon May 6 10:01:16 2019 -0700
A few initial library additions for eventual Hi-C support, refs #18842

diff --git src/hg/lib/chromAlias.h src/hg/lib/chromAlias.h
deleted file mode 100644
index 9b91954..0000000
--- src/hg/lib/chromAlias.h
+++ /dev/null
@@ -1,68 +0,0 @@
-/* chromAlias.h was originally generated by the autoSql program, which also 
- * generated chromAlias.c and chromAlias.sql.  This header links the database and
- * the RAM representation of objects. */
-
-#ifndef CHROMALIAS_H
-#define CHROMALIAS_H
-
-#define CHROMALIAS_NUM_COLS 3
-
-extern char *chromAliasCommaSepFieldNames;
-
-struct chromAlias
-/* correspondence of UCSC chromosome names to refseq, genbank, and ensembl names */
-    {
-    struct chromAlias *next;  /* Next in singly linked list. */
-    char *alias;	/* external name */
-    char *chrom;	/* UCSC genome browser chromosome name */
-    char *source;	/* comma separated list, when available: refseq,genbank,ensembl */
-    };
-
-void chromAliasStaticLoad(char **row, struct chromAlias *ret);
-/* Load a row from chromAlias table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-
-struct chromAlias *chromAliasLoad(char **row);
-/* Load a chromAlias from row fetched with select * from chromAlias
- * from database.  Dispose of this with chromAliasFree(). */
-
-struct chromAlias *chromAliasLoadAll(char *fileName);
-/* Load all chromAlias from whitespace-separated file.
- * Dispose of this with chromAliasFreeList(). */
-
-struct chromAlias *chromAliasLoadAllByChar(char *fileName, char chopper);
-/* Load all chromAlias from chopper separated file.
- * Dispose of this with chromAliasFreeList(). */
-
-#define chromAliasLoadAllByTab(a) chromAliasLoadAllByChar(a, '\t');
-/* Load all chromAlias from tab separated file.
- * Dispose of this with chromAliasFreeList(). */
-
-struct chromAlias *chromAliasCommaIn(char **pS, struct chromAlias *ret);
-/* Create a chromAlias out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new chromAlias */
-
-void chromAliasFree(struct chromAlias **pEl);
-/* Free a single dynamically allocated chromAlias such as created
- * with chromAliasLoad(). */
-
-void chromAliasFreeList(struct chromAlias **pList);
-/* Free a list of dynamically allocated chromAlias's */
-
-void chromAliasOutput(struct chromAlias *el, FILE *f, char sep, char lastSep);
-/* Print out chromAlias.  Separate fields with sep. Follow last field with lastSep. */
-
-#define chromAliasTabOut(el,f) chromAliasOutput(el,f,'\t','\n');
-/* Print out chromAlias as a line in a tab-separated file. */
-
-#define chromAliasCommaOut(el,f) chromAliasOutput(el,f,',',',');
-/* Print out chromAlias as a comma separated list including final comma. */
-
-void chromAliasJsonOutput(struct chromAlias *el, FILE *f);
-/* Print out chromAlias in JSON format. */
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-#endif /* CHROMALIAS_H */
-