3c4e6f0fa521b6534c5892e5db61b76eeca9b40a ccpowell Tue Jun 4 15:50:55 2019 -0700 Fixing link to hg38's Transcription Factor ChIP-seq Clusters tracks, refs #23243 diff --git src/hg/makeDb/trackDb/human/encTfChipPk.html src/hg/makeDb/trackDb/human/encTfChipPk.html index b35b4f0..1c23f54 100644 --- src/hg/makeDb/trackDb/human/encTfChipPk.html +++ src/hg/makeDb/trackDb/human/encTfChipPk.html @@ -3,31 +3,31 @@ This track represents a comprehensive set of human transcription factor binding sites based on ChIP-seq experiments generated by production groups in the ENCODE Consortium between February 2011 and November 2018.</p> <p> Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to specific short DNA sequences ('motifs'); others bind to DNA indirectly through interactions with TFs containing a DNA binding domain. High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation followed by sequencing, or 'ChIP-seq') can be used to identify regions of TF binding genome-wide. These regions are commonly called ChIP-seq peaks.</p> The related <i>Transcription Factor ChIP-seq Clusters</i> tracks (<a target="_blank" href="../cgi-bin/hgTrackUi?db=hg19&g=encRegTfbsClustered">hg19</a>, -<a target="_blank" href="../cgi-bin/hgTrackUi?db=hg19&g=encRegTfbsClustered">hg38</a>) +<a target="_blank" href="../cgi-bin/hgTrackUi?db=hg38&g=encRegTfbsClustered">hg38</a>) provide summary views of this data. </p> <p> <h2>Display and File Conventions and Configuration</h2> <p> The display for this track shows site location with the point-source of the peak marked with a colored vertical bar and the level of enrichment at the site indicated by the darkness of the item. The subtracks are colored by UCSC ENCODE 2 cell type color conventions on the hg19 assembly, and by similarity of cell types in DNaseI hypersensitivity assays (as in the <a target="_blank" href="../cgi-bin/hgTrackUi?db=hg38&g=wgEncodeRegDnaseWig">DNase Signal</a>) track in the hg38 assembly.<p> The display can be filtered to higher valued items, using the <em>Score range:</em> configuration item.