79dec56e5e70c985527f73c0a292c70025609ee0 dschmelt Wed Jun 5 16:57:31 2019 -0700 Adding CHO release info #20540 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 7641467..0a05229 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,67 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="60619"></a> +<h2>June 6, 2019 New Genome Browser: Chinese Hamster Ovary (CHO) cell line, criGriChoV2 (<em>Cricetulus griseus</em>)</h2> +<p> +A genome browser is now available for the <em>Chinese Hamster Ovary cell line</em> assembly released in June 2017 by the +<a href="https://www.eaglegenomics.com/eagle-case-studies/horizon-case-study/" target="_blank">Eagle Genomics Ltd</a> (CHOK1S_HZDv1). +<h3>About the assembly:</h3> +<ul> + <li><b>UCSC Genome Browser assembly ID:</b> <a href=../cgi-bin/hgTracks?db=criGriChoV2>criGriChoV2</a></li> + <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.eaglegenomics.com/" target="_blank"> + Eagle Genomics Ltd</a></li> + <li><b>Assembly date:</b> June 2017</li> + <li><b>Accession ID:</b> GCA_900186095.1</li> + <li><b>NCBI Genome information:</b><a href="https://www.ncbi.nlm.nih.gov/genome/2791" +target="_blank" > 2791</a> <em>(Cricetulus griseus)</em></li> + <li><b>NCBI Assembly information:</b><a href="https://www.ncbi.nlm.nih.gov/assembly/1422381" +target="_blank" > 1422381</a></li> + <li><b>NCBI BioProject information:</b><a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJEB21211" +target="_blank" > PRJEB21211</a></li> + <li><b>NCBI BioSample information:</b><a href="https://www.ncbi.nlm.nih.gov/biosample/SAMEA104116709" +target="_blank" > SAMEA104116709</a></li> + <li><b>Contig+scaffold count:</b> 71,598</li> + <li><b>Total size:</b> 2,358,908,658</li> + <li><a href="../goldenPath/credits.html#chinese_hamster_credits" +target="_blank" >Acknowledgments</a></li> +</ul> +<h3>Data and Downloads:</h3> +<ul> + <li><a href="../goldenPath/credits.html#chinese_hamster_use" +target="_blank" >Data use conditions and restrictions</a></li> + <li><a href="../goldenPath/help/ftp.html" +target="_blank" >Rsync</a> and +<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/" +target="_blank" >FTP</a></li> + <li><a href="http://hgdownload.soe.ucsc.edu/downloads.html#chinese_hamster" +target="_blank" >Downloads page</a></li> +</ul> +</p> <a name="52119"></a> <h2>May 21, 2019 New Genome Browser: Cat, felCat9 (<em>Felis catus</em>)</h2> <p> A genome browser is now available for the <em>Felis catus</em> assembly released in November 2017 by the <a href="https://www.genome.wustl.edu/" target="_blank">Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine</a> (Felis_catus_9.0). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> felCat9</li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.genome.wustl.edu/" target="_blank"> Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine</a></li> <li><b>Assembly date:</b> November 2017</li> <li><b>Accession ID:</b> GCF_000181335.3</li> <li><b>NCBI Genome information:</b><a href="https://www.ncbi.nlm.nih.gov/genome/78" target="_blank" > 78</a> <em>(Felis catus)</em></li>