91cecec4e65aa52dfa528d17a1fba9e1b7672381
lrnassar
  Tue Jun 4 13:41:15 2019 -0700
Updating scripts to point to new beta machine #23616

diff --git src/utils/qa/knownGene.csh src/utils/qa/knownGene.csh
index 65eb4b7..db91059 100755
--- src/utils/qa/knownGene.csh
+++ src/utils/qa/knownGene.csh
@@ -68,31 +68,31 @@
 echo "using $oldDb for beta db "
 set curr_dir=$cwd
 
 #  get sets of KG, GS, PB tables from master list:
 findKgTableSet.csh $db 
 
 # count items in list
 echo "found the following KG tables:"
 wc -l $db.{kg,gs,pb}Tables
 cat $db.{kg,gs,pb}Tables | sort -u > $db.allTables
 echo "will have some overlap. uniq tables = `cat $db.allTables | sort -u | wc -l`"
 
 # find new tables: in pushQ but NOT in a kgTables list
 echo
 echo "find new tables: in pushQ but NOT in a kgTables list"
-hgsql -h mysqlbeta -Ne "SELECT tbls FROM pushQ WHERE tbls LIKE '%knownGene%' \
+hgsql -h $sqlbeta -Ne "SELECT tbls FROM pushQ WHERE tbls LIKE '%knownGene%' \
   AND dbs = '"$db"'" qapushq | sed "s/\\n/\n/g" | egrep -r . > $db.pushqKgList
 dos2unix $db.pushqKgList >& /dev/null
 commTrio.csh $db.allTables $db.pushqKgList 
 
 if ( `wc -l $db.allTables.Only | awk '{print $1}'` != 0 ) then
   echo "these tables may be in separate tracks? ($db.allTables.Only) :"
   cat $db.allTables.Only
 endif 
 echo
 
 # --------------------------------------------
 
 echo
 echo "compare new genes to old set (uniq):"
 echo "not useful for first releasse of KG3-type track"