f5a6fb3df981f5ec1a2df4bed019b426bb25341f
max
  Fri Jun 7 02:27:58 2019 -0700
preparing mastermind hg38 track and ottomatization by moving trackDb
statements up one level. No redmine yet, as this is merely a move of
existing information, not yet any change.

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index b5e7b77..be9f55e 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -122,30 +122,55 @@
 nextExonText Right edge
 html decipher
 
 track phegeni
 shortLabel PheGenI SNPs
 longLabel NCBI Phenotype-Genotype Integrator SNPs
 group phenDis
 visibility hide
 color 0,100,0
 type bigBed 9 +
 release alpha
 mouseOverField trait
 bigDataUrl /gbdb/$D/bbi/phegeni.bb
 urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$
 
+track varsInPubs
+shortLabel Variants in Papers
+longLabel Genetic Variants mentioned in scientific publications
+superTrack on
+group phenDis
+type bed 3
+pennantIcon New red ../goldenPath/newsarch.html#032619  Released March 26, 2019
+
+        track mastermind
+        shortLabel Mastermind Variants
+        longLabel Genomenon Mastermind Variants extracted from full text publications
+        visibility dense
+        type bigBed 9 +
+        urls url=https://mastermind.genomenon.com/detail?disease=all%20diseases&$$
+        bigDataUrl /gbdb/$D/bbi/mastermind.bb
+        noScoreFilter on
+        exonNumbers off
+        mouseOverField _mouseOver
+        itemRgb on
+        mmcnt1Filter 0
+        mmcnt2Filter 0
+        mmcnt3Filter 0
+        dataVersion /gbdb/hg19/bbi/mastermindRelease.txt
+        parent varsInPubs
+
 track caseControl
 compositeTrack on
 shortLabel Case Control
 longLabel Case Control Consortium
 group phenDis
 visibility hide
 type chromGraph
 minMax 0,15
 linesAt 5,10
 
     track cccTrendPvalBd
     parent caseControl
     shortLabel CCC Bipolar Dis
     longLabel Case Control Consortium Bipolar Disorder Trend -log10 P-value
     priority 1