Commits for angie

v382_base to v383_preview (2019-05-20 to 2019-05-27) v383

fd526976ba5971d4bae14235cf2f735751a5e548 Wed May 15 14:26:41 2019 -0700

• Adding doReSaveSession to streamline loading and saving a session in one CGI request, for converting old session trash paths and customTrash tables to userdata and customData. refs #22440
  • src/hg/hgSession/hgSession.c - lines changed 87, context: html, text, full: html, text
  • src/hg/hgSession/hgSession.h - lines changed 5, context: html, text, full: html, text

61bd70ac016c2b0691753bb0f5acafc7bf2ad53b Tue May 14 09:49:16 2019 -0700

• Adding convertUserSessions.sh and sessionDataConvert.sh for bulk conversion of old saved sessions to use sessionDataDir/sessionDataDbPrefix. refs #22440
  • src/hg/hgSession/convertUserSessions.sh - lines changed 55, context: html, text, full: html, text
  • src/hg/hgSession/sessionDataConvert.sh - lines changed 93, context: html, text, full: html, text

13e46137c78bb4ba2e27e913c958715c0508fdd6 Tue May 21 12:39:53 2019 -0700

• Fix missing hFreeConn that caused 'too many open connections' error for sessions with lots of dbTable custom tracks. refs #22440
  • src/hg/hgSession/sessionData.c - lines changed 4, context: html, text, full: html, text

4c63c358efeed6aaf99fad3993e63123cd6a0f79 Wed May 22 10:30:58 2019 -0700

• Use errCatch to avoid errAborts when re-saving sessions whose db has been removed. refs #22440
  • src/hg/hgSession/hgSession.c - lines changed 26, context: html, text, full: html, text

e64d62b5403c486838f43bf4d1283c3230840fea Wed May 22 10:31:45 2019 -0700

• Adding quotes necessary for dealing with decoded usernames that end with space(s). refs #22440
  • src/hg/hgSession/sessionDataConvert.sh - lines changed 1, context: html, text, full: html, text

85188ac087873b2964fcfbc3426694ca68bdd489 Wed May 22 10:33:21 2019 -0700

• Reducing delay between calls to sessionDataConvert.sh because it's fairly lightweight and there are a lot of sessions to convert. refs #22440
  • src/hg/hgSession/convertUserSessions.sh - lines changed 1, context: html, text, full: html, text

8a0285e2e86e8d604b21e1cc2a5cfaef4c28c00e Wed May 22 11:29:22 2019 -0700

• Look out for loss of files in cart var ss, in addition to hgPcrResult_*. refs #22440
  • src/hg/hgSession/sessionData.c - lines changed 3, context: html, text, full: html, text

cc91854c275763be567dd246d23336660dea58a0 Wed May 22 12:25:00 2019 -0700

• Adding hg.conf setting sessionDataDirOld so that isValidBigDataUrl won't complain about absolute paths of trashCleaner-saved files from old sessions. refs #22440
  • src/hg/lib/customFactory.c - lines changed 3, context: html, text, full: html, text

45764c815bb96401f97540ca20ef0b09f67cdcf2 Fri May 24 13:37:21 2019 -0700

• When re-saving session, preserve shared column which is not a boolean but rather {0, 1, 2=public session}. refs #22440 note-170
  • src/hg/hgSession/hgSession.c - lines changed 7, context: html, text, full: html, text

c260b871d385d446347ea0cf4fa2795111e28ae4 Fri May 24 14:08:36 2019 -0700

• RefSeq updated NM_153758.2 to NM_153758.3; update refSeqGet test files accordingly.
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.meta - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.psl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa - lines changed 28, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa - lines changed 28, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/input/versioned.acc - lines changed 1, context: html, text, full: html, text