583e30e3cbfc3c95eb94696d51c8979493caa9a3 galt Mon May 20 23:49:34 2019 -0700 html pages fixed for problems found with htmlCheck validate and strictTagNestCheck diff --git src/hg/near/hgNear/hgNearData/affyExonTissuesGs.html src/hg/near/hgNear/hgNearData/affyExonTissuesGs.html index fe53bb4..daa4394 100644 --- src/hg/near/hgNear/hgNearData/affyExonTissuesGs.html +++ src/hg/near/hgNear/hgNearData/affyExonTissuesGs.html @@ -15,46 +15,46 @@ Black indicates that a gene is neither over- nor under-expressed in the tissue. Uncolored boxes (white on most browsers) represent missing data.
Several column configuration options are available on the Configuration page, which can be accessed via the configure button in the top menu.
RNA (from a commercial source) from 11 tissues were hybridized to Affymetrix All Exon 1.0 ST arrays. For each tissue, 3 replicate experiments were done for a total of 33 arrays. The arrays' raw signal intensity was normalized with a quantile normalization method, then run through the PLIER algorithm. The normalized data were then converted to log-ratios, which are displayed as green for negative log-ratios (under-expression), and red for positive (over-expression).
When calculating expression ratios, the overall expression level in the denominator was calculated by first taking the median of replicates for each tissue and then taking the median of these medians.