0df7d8fdb7c40a393e33791956a8c98ab460dead
markd
  Thu May 23 10:54:50 2019 -0700
import mouse GENCODE VM22 pre-release

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index 4c10ba7..60e8142 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -17903,16 +17903,57 @@
     # edit mouse/mm10/trackDb.gencode.ra to add new .ra file include
     make DBS=mm10
 
     ## only if being pushed to RR:
     # edit  all.joiner to add ~/tmp/gencodeVM21.joiner
     # verify with:
     pushd /hive/data/genomes/mm10/bed/gencodeVM21
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck db=mm10
 
     # commit all and make push request, the file tables.lst will have the
     # list of tables for the push request.
 
     cd ~/kent/src/hg/makeDb/trackDb
     make alpha DBS=mm10
 
+    # commit all
+    # if pushing public, add ticket and MARK QA READY
+
+#########################################################################
+2019-05-23: import of UCSC GENCODE group processing of GENCODE VM21 (markd)
+    # import of pre-release, it will be promoted if there are no changes in the final release.
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/mm10/bed/gencodeVM22-pre
+    pushd /hive/data/genomes/mm10/bed/gencodeVM22-pre
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    ##  gencode-cmp.tsv check to see if sizes make sense
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm10 M22 97 'June 2019'
+
+    ## only if being pushed to RR:
+    # Update mouse/mm10/wgEncodeGencodeSuper.html
+    # Update 'Release Notes' to describe new release.
+
+    # edit mouse/mm10/trackDb.gencode.ra to add new .ra file include
+    make DBS=mm10
+
+    ## only if being pushed to RR:
+    # edit  all.joiner to add ~/tmp/gencodeVM22.joiner
+    # verify with:
+    pushd /hive/data/genomes/mm10/bed/gencodeVM22-pre
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck db=mm10
+
+    # commit all and make push request, the file tables.lst will have the
+    # list of tables for the push request.
+
+    cd ~/kent/src/hg/makeDb/trackDb
+    make alpha DBS=mm10
+
+    # commit all
+    # if pushing public, add ticket and MARK QA READY
+
 #########################################################################