0df7d8fdb7c40a393e33791956a8c98ab460dead markd Thu May 23 10:54:50 2019 -0700 import mouse GENCODE VM22 pre-release diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 372c7c8..04a93e0 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,45 +23,45 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -db = hg38 +#db = hg38 #db = hg19 -#db = mm10 +db = mm10 #db = grcHhh38 #preRelease = no preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 - ver = M21 - prevVer = M20 + ver = M22 + prevVer = M21 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation - ensemblVer = 96_38 - ensemblPrevVer = 95_38 + ensemblVer = 97_38 + ensemblPrevVer = 96_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 31 prevVer = 30 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 97_38 ensemblPrevVer = 96_38 ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} else ifeq (${db},grcHhh38) # hg38 with patches grcRefAssembly = GRCh38 ver = 28