d8a632950a717f3ecaddbfb01c0e0b84f5b6726a markd Tue May 21 11:57:36 2019 -0700 remove static limit on size the number of blocks that can be in a bigPsl. Test case not checked in, as it is 20mb for one record (fixes #23537) diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 1f3ee2e..372c7c8 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,55 +23,55 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -#db = hg38 -db = hg19 +db = hg38 +#db = hg19 #db = mm10 #db = grcHhh38 -preRelease = no -#preRelease = yes +#preRelease = no +preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M21 prevVer = M20 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 96_38 ensemblPrevVer = 95_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 - ver = 30 - prevVer = 29 + ver = 31 + prevVer = 30 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation - ensemblVer = 96_38 - ensemblPrevVer = 94_38 + ensemblVer = 97_38 + ensemblPrevVer = 96_38 ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} else ifeq (${db},grcHhh38) # hg38 with patches grcRefAssembly = GRCh38 ver = 28 prevVer = 27 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 94_38 ensemblPrevVer = 93_38 ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} else ifeq (${db},hg19) grcRefAssembly = GRCh37 verBase = 30