d8a632950a717f3ecaddbfb01c0e0b84f5b6726a markd Tue May 21 11:57:36 2019 -0700 remove static limit on size the number of blocks that can be in a bigPsl. Test case not checked in, as it is 20mb for one record (fixes #23537) diff --git src/hg/inc/encode/wgEncodeGencodeGeneSymbol.h src/hg/inc/encode/wgEncodeGencodeGeneSymbol.h index 8b20710..bea7794 100644 --- src/hg/inc/encode/wgEncodeGencodeGeneSymbol.h +++ src/hg/inc/encode/wgEncodeGencodeGeneSymbol.h @@ -1,64 +1,65 @@ /* wgEncodeGencodeGeneSymbol.h was originally generated by the autoSql program, which also * generated wgEncodeGencodeGeneSymbol.c and wgEncodeGencodeGeneSymbol.sql. This header links the database and * the RAM representation of objects. */ #ifndef WGENCODEGENCODEGENESYMBOL_H #define WGENCODEGENCODEGENESYMBOL_H -#define WGENCODEGENCODEGENESYMBOL_NUM_COLS 2 +#define WGENCODEGENCODEGENESYMBOL_NUM_COLS 3 extern char *wgEncodeGencodeGeneSymbolCommaSepFieldNames; struct wgEncodeGencodeGeneSymbol /* GENCODE transcript to official gene symbol. For human, this is the HUGO Gene Nomenclature Committee (HGNC) gene symbo. For mouse, this is the Mouse Genome Informatics (MGI) gene symbol. */ { struct wgEncodeGencodeGeneSymbol *next; /* Next in singly linked list. */ char *transcriptId; /* GENCODE transcript identifier */ char *symbol; /* HGNC/MGI gene symbol */ + char *geneId; /* HGNC/MGI symbol id used by database */ }; void wgEncodeGencodeGeneSymbolStaticLoad(char **row, struct wgEncodeGencodeGeneSymbol *ret); /* Load a row from wgEncodeGencodeGeneSymbol table into ret. The contents of ret will * be replaced at the next call to this function. */ struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoad(char **row); /* Load a wgEncodeGencodeGeneSymbol from row fetched with select * from wgEncodeGencodeGeneSymbol * from database. Dispose of this with wgEncodeGencodeGeneSymbolFree(). */ struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoadAll(char *fileName); /* Load all wgEncodeGencodeGeneSymbol from whitespace-separated file. * Dispose of this with wgEncodeGencodeGeneSymbolFreeList(). */ struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoadAllByChar(char *fileName, char chopper); /* Load all wgEncodeGencodeGeneSymbol from chopper separated file. * Dispose of this with wgEncodeGencodeGeneSymbolFreeList(). */ #define wgEncodeGencodeGeneSymbolLoadAllByTab(a) wgEncodeGencodeGeneSymbolLoadAllByChar(a, '\t'); /* Load all wgEncodeGencodeGeneSymbol from tab separated file. * Dispose of this with wgEncodeGencodeGeneSymbolFreeList(). */ struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolCommaIn(char **pS, struct wgEncodeGencodeGeneSymbol *ret); /* Create a wgEncodeGencodeGeneSymbol out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new wgEncodeGencodeGeneSymbol */ void wgEncodeGencodeGeneSymbolFree(struct wgEncodeGencodeGeneSymbol **pEl); /* Free a single dynamically allocated wgEncodeGencodeGeneSymbol such as created * with wgEncodeGencodeGeneSymbolLoad(). */ void wgEncodeGencodeGeneSymbolFreeList(struct wgEncodeGencodeGeneSymbol **pList); /* Free a list of dynamically allocated wgEncodeGencodeGeneSymbol's */ void wgEncodeGencodeGeneSymbolOutput(struct wgEncodeGencodeGeneSymbol *el, FILE *f, char sep, char lastSep); /* Print out wgEncodeGencodeGeneSymbol. Separate fields with sep. Follow last field with lastSep. */ #define wgEncodeGencodeGeneSymbolTabOut(el,f) wgEncodeGencodeGeneSymbolOutput(el,f,'\t','\n'); /* Print out wgEncodeGencodeGeneSymbol as a line in a tab-separated file. */ #define wgEncodeGencodeGeneSymbolCommaOut(el,f) wgEncodeGencodeGeneSymbolOutput(el,f,',',','); /* Print out wgEncodeGencodeGeneSymbol as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* WGENCODEGENCODEGENESYMBOL_H */