d8a632950a717f3ecaddbfb01c0e0b84f5b6726a
markd
  Tue May 21 11:57:36 2019 -0700
remove static limit on size the number of blocks that can be in a bigPsl.  Test case not checked in, as it is 20mb for one record (fixes #23537)

diff --git src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c
index 38947a8..909b7e8 100644
--- src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c
+++ src/hg/lib/encode/wgEncodeGencodeGeneSymbol.c
@@ -1,126 +1,134 @@
 /* wgEncodeGencodeGeneSymbol.c was originally generated by the autoSql program, which also 
  * generated wgEncodeGencodeGeneSymbol.h and wgEncodeGencodeGeneSymbol.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "encode/wgEncodeGencodeGeneSymbol.h"
 
 
 
-char *wgEncodeGencodeGeneSymbolCommaSepFieldNames = "transcriptId,symbol";
+char *wgEncodeGencodeGeneSymbolCommaSepFieldNames = "transcriptId,symbol,geneId";
 
 void wgEncodeGencodeGeneSymbolStaticLoad(char **row, struct wgEncodeGencodeGeneSymbol *ret)
 /* Load a row from wgEncodeGencodeGeneSymbol table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->transcriptId = row[0];
 ret->symbol = row[1];
+ret->geneId = row[2];
 }
 
 struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoad(char **row)
 /* Load a wgEncodeGencodeGeneSymbol from row fetched with select * from wgEncodeGencodeGeneSymbol
  * from database.  Dispose of this with wgEncodeGencodeGeneSymbolFree(). */
 {
 struct wgEncodeGencodeGeneSymbol *ret;
 
 AllocVar(ret);
 ret->transcriptId = cloneString(row[0]);
 ret->symbol = cloneString(row[1]);
+ret->geneId = cloneString(row[2]);
 return ret;
 }
 
 struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoadAll(char *fileName) 
 /* Load all wgEncodeGencodeGeneSymbol from a whitespace-separated file.
  * Dispose of this with wgEncodeGencodeGeneSymbolFreeList(). */
 {
 struct wgEncodeGencodeGeneSymbol *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[2];
+char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = wgEncodeGencodeGeneSymbolLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolLoadAllByChar(char *fileName, char chopper) 
 /* Load all wgEncodeGencodeGeneSymbol from a chopper separated file.
  * Dispose of this with wgEncodeGencodeGeneSymbolFreeList(). */
 {
 struct wgEncodeGencodeGeneSymbol *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[2];
+char *row[3];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = wgEncodeGencodeGeneSymbolLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wgEncodeGencodeGeneSymbol *wgEncodeGencodeGeneSymbolCommaIn(char **pS, struct wgEncodeGencodeGeneSymbol *ret)
 /* Create a wgEncodeGencodeGeneSymbol out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new wgEncodeGencodeGeneSymbol */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->transcriptId = sqlStringComma(&s);
 ret->symbol = sqlStringComma(&s);
+ret->geneId = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void wgEncodeGencodeGeneSymbolFree(struct wgEncodeGencodeGeneSymbol **pEl)
 /* Free a single dynamically allocated wgEncodeGencodeGeneSymbol such as created
  * with wgEncodeGencodeGeneSymbolLoad(). */
 {
 struct wgEncodeGencodeGeneSymbol *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->transcriptId);
 freeMem(el->symbol);
+freeMem(el->geneId);
 freez(pEl);
 }
 
 void wgEncodeGencodeGeneSymbolFreeList(struct wgEncodeGencodeGeneSymbol **pList)
 /* Free a list of dynamically allocated wgEncodeGencodeGeneSymbol's */
 {
 struct wgEncodeGencodeGeneSymbol *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     wgEncodeGencodeGeneSymbolFree(&el);
     }
 *pList = NULL;
 }
 
 void wgEncodeGencodeGeneSymbolOutput(struct wgEncodeGencodeGeneSymbol *el, FILE *f, char sep, char lastSep) 
 /* Print out wgEncodeGencodeGeneSymbol.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->transcriptId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->symbol);
 if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->geneId);
+if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */